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The map label for this gene is cspC

Identifier: 227817950

GI number: 227817950

Start: 4914453

End: 4914650

Strand: Reverse

Name: cspC

Synonym: BAMEG_5475

Alternate gene names: 227817950

Gene position: 4914650-4914453 (Counterclockwise)

Preceding gene: 227817951

Following gene: 227817948

Centisome position: 93.97

GC content: 37.88

Gene sequence:

>198_bases
ATGCAAGGAAGAGTGAAATGGTTTAATGCAGAAAAGGGATTTGGGTTTATTGAGCGTGAAGATGGTGATGATGTGTTTGT
TCATTTTTCTGCTATTCAACAAGATGGATATAAGTCATTAGAAGAAGGGCAACAAGTTGAGTTTGATATTGTAGATGGAG
CACGTGGACCACAAGCAGCTAATGTTGTAAAACTGTAG

Upstream 100 bases:

>100_bases
AAAGGCGATAAGTCTTCTTTGACTTCGTATGTTGTCATTCGTTATAGTCAAATTATGGGGCGAATGCCATGATTTTTAGA
GTGAAGGGAATGGAATGAAC

Downstream 100 bases:

>100_bases
GTATATTGTTTTTGGGAAGAGAAAGCTGCGTTTGTGGCAACGTTATATATATGTAGTAGAACCTCTTGTTTTTTTGCAAG
GGGTTTTTGTTATAAAATGA

Product: cold shock protein CspC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 65; Mature: 65

Protein sequence:

>65_residues
MQGRVKWFNAEKGFGFIEREDGDDVFVHFSAIQQDGYKSLEEGQQVEFDIVDGARGPQAANVVKL

Sequences:

>Translated_65_residues
MQGRVKWFNAEKGFGFIEREDGDDVFVHFSAIQQDGYKSLEEGQQVEFDIVDGARGPQAANVVKL
>Mature_65_residues
MQGRVKWFNAEKGFGFIEREDGDDVFVHFSAIQQDGYKSLEEGQQVEFDIVDGARGPQAANVVKL

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain

Homologues:

Organism=Homo sapiens, GI224586884, Length=66, Percent_Identity=48.4848484848485, Blast_Score=64, Evalue=2e-11,
Organism=Homo sapiens, GI224586882, Length=66, Percent_Identity=48.4848484848485, Blast_Score=64, Evalue=3e-11,
Organism=Homo sapiens, GI34098946, Length=66, Percent_Identity=48.4848484848485, Blast_Score=64, Evalue=4e-11,
Organism=Homo sapiens, GI156415990, Length=65, Percent_Identity=47.6923076923077, Blast_Score=62, Evalue=8e-11,
Organism=Escherichia coli, GI1786841, Length=66, Percent_Identity=66.6666666666667, Blast_Score=95, Evalue=7e-22,
Organism=Escherichia coli, GI1789979, Length=66, Percent_Identity=69.6969696969697, Blast_Score=94, Evalue=1e-21,
Organism=Escherichia coli, GI1787839, Length=64, Percent_Identity=67.1875, Blast_Score=89, Evalue=5e-20,
Organism=Escherichia coli, GI2367114, Length=66, Percent_Identity=63.6363636363636, Blast_Score=87, Evalue=3e-19,
Organism=Escherichia coli, GI1788126, Length=66, Percent_Identity=62.1212121212121, Blast_Score=85, Evalue=8e-19,
Organism=Escherichia coli, GI1787834, Length=66, Percent_Identity=62.1212121212121, Blast_Score=84, Evalue=1e-18,
Organism=Escherichia coli, GI1787107, Length=65, Percent_Identity=50.7692307692308, Blast_Score=72, Evalue=5e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CSPC_BACAN (P62169)

Other databases:

- EMBL:   AE016879
- EMBL:   AE017334
- EMBL:   AE017225
- RefSeq:   NP_847592.1
- RefSeq:   YP_022086.2
- RefSeq:   YP_031279.1
- ProteinModelPortal:   P62169
- SMR:   P62169
- EnsemblBacteria:   EBBACT00000012131
- EnsemblBacteria:   EBBACT00000018032
- EnsemblBacteria:   EBBACT00000022166
- GeneID:   1085020
- GeneID:   2818619
- GeneID:   2851935
- GenomeReviews:   AE016879_GR
- GenomeReviews:   AE017225_GR
- GenomeReviews:   AE017334_GR
- KEGG:   ban:BA_5424
- KEGG:   bar:GBAA_5424
- KEGG:   bat:BAS5040
- TIGR:   BA_5424
- TIGR:   GBAA_5424
- GeneTree:   EBGT00070000031771
- HOGENOM:   HBG717773
- OMA:   ASESVHI
- ProtClustDB:   CLSK873658
- BioCyc:   BANT260799:BAS5040-MONOMER
- BioCyc:   BANT261594:GBAA5424-MONOMER
- GO:   GO:0005737
- GO:   GO:0006350
- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027
- Gene3D:   G3DSA:2.40.50.140
- PIRSF:   PIRSF002599
- PRINTS:   PR00050
- SMART:   SM00357

Pfam domain/function: PF00313 CSD; SSF50249 Nucleic_acid_OB

EC number: NA

Molecular weight: Translated: 7305; Mature: 7305

Theoretical pI: Translated: 4.33; Mature: 4.33

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQGRVKWFNAEKGFGFIEREDGDDVFVHFSAIQQDGYKSLEEGQQVEFDIVDGARGPQAA
CCCCEEEEECCCCCCEEEECCCCEEEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCCC
NVVKL
CEECC
>Mature Secondary Structure
MQGRVKWFNAEKGFGFIEREDGDDVFVHFSAIQQDGYKSLEEGQQVEFDIVDGARGPQAA
CCCCEEEEECCCCCCEEEECCCCEEEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCCC
NVVKL
CEECC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12721629