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The map label for this gene is xerD [H]

Identifier: 227817893

GI number: 227817893

Start: 4859784

End: 4860689

Strand: Reverse

Name: xerD [H]

Synonym: BAMEG_5416

Alternate gene names: 227817893

Gene position: 4860689-4859784 (Counterclockwise)

Preceding gene: 227817894

Following gene: 227817892

Centisome position: 92.94

GC content: 35.76

Gene sequence:

>906_bases
TTGCTCAAAGATTTGCTGAAGGAATTTGTATTTGATTTGAAAATCAAGAATTATTCCGATAGGACAATCGACACATACAA
TTACAATGTGGGACAGCTTATAACATATTTGAACGAGCATCATGAAGTAAATGATGTAGAAGATGTAGCTACATTTCATA
TTAAAAAATTTGTACAGCATCAAATTAGCTTAGGGAAAAAAGCCAATTACATTAATACATTGATTAAATCGTTGAGGAGC
TTTTACAAATATCTTGTGGTTGAAGAATATGTGAGTGTAAACATCATGAACAAAATAAAGTTGCTGAAGGAAGATGTGGA
AGTAATAAAAACGTTCACTGATGATGAAGTAGCTAAAATGATTGAAGCCTACGACTTTAAAACGTATTTAAACGCACGAA
ATAAAGTAATAATCGCAATGTTTGTGGATACTGGTATGAGGATGAGCGAATTGATAAATTTACAATCCAGCTGGATCTAT
GATACGAGCTTGCGAATTAAAGGAAAAGGTTCAAAATGGCGACATGTTCCCATGAGCTTAATGTTGAAAAAATACATGAT
ACGTTACGAACGGATTAAAGCGAAGTATTTCGAAAAGAAAGCATTGGAACATGATAATTACTTTTTATCGAGAGCTGGCA
AACCAATCTGTACCGTACAGATTGAGAACATCGTCAAAATCGCTGGCTTACGTGCTGGCGTTCGAGAAGACATTCGTTGT
TCACCGCATACGGTACGACATTATGCCATTCAGTCGAACCTTAGGAACGGTTTAGACCTGTATTCATGCTCAAAGATTGC
TGGTCATGAGAATATTCAAGTGACAAAACGCTATCTACAGGGATTGGAAATGGAGAACATTTTGGAGATGGCTCAAAAGA
CAAGCCCGTTGATGAATTTACGATAA

Upstream 100 bases:

>100_bases
ATTTGCTAACGCTTGAATTGAGCAATGCGGAAGCAAATACTTAGTCGTACACAAACCTCTTGTTTATGTGTTAATCCACA
TGGACAGGAGGTTTTTTGTT

Downstream 100 bases:

>100_bases
AAACAAAAAACGAACGGATTATAGGATGGCCGTCCTACCGCTCGTTACCACACAATAGCTCAAGTGCTATCGTGATTACA
TTTTATCATGATAAGCTCCT

Product: prophage LambdaBa03, site-specific recombinase, phage integrase family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MLKDLLKEFVFDLKIKNYSDRTIDTYNYNVGQLITYLNEHHEVNDVEDVATFHIKKFVQHQISLGKKANYINTLIKSLRS
FYKYLVVEEYVSVNIMNKIKLLKEDVEVIKTFTDDEVAKMIEAYDFKTYLNARNKVIIAMFVDTGMRMSELINLQSSWIY
DTSLRIKGKGSKWRHVPMSLMLKKYMIRYERIKAKYFEKKALEHDNYFLSRAGKPICTVQIENIVKIAGLRAGVREDIRC
SPHTVRHYAIQSNLRNGLDLYSCSKIAGHENIQVTKRYLQGLEMENILEMAQKTSPLMNLR

Sequences:

>Translated_301_residues
MLKDLLKEFVFDLKIKNYSDRTIDTYNYNVGQLITYLNEHHEVNDVEDVATFHIKKFVQHQISLGKKANYINTLIKSLRS
FYKYLVVEEYVSVNIMNKIKLLKEDVEVIKTFTDDEVAKMIEAYDFKTYLNARNKVIIAMFVDTGMRMSELINLQSSWIY
DTSLRIKGKGSKWRHVPMSLMLKKYMIRYERIKAKYFEKKALEHDNYFLSRAGKPICTVQIENIVKIAGLRAGVREDIRC
SPHTVRHYAIQSNLRNGLDLYSCSKIAGHENIQVTKRYLQGLEMENILEMAQKTSPLMNLR
>Mature_301_residues
MLKDLLKEFVFDLKIKNYSDRTIDTYNYNVGQLITYLNEHHEVNDVEDVATFHIKKFVQHQISLGKKANYINTLIKSLRS
FYKYLVVEEYVSVNIMNKIKLLKEDVEVIKTFTDDEVAKMIEAYDFKTYLNARNKVIIAMFVDTGMRMSELINLQSSWIY
DTSLRIKGKGSKWRHVPMSLMLKKYMIRYERIKAKYFEKKALEHDNYFLSRAGKPICTVQIENIVKIAGLRAGVREDIRC
SPHTVRHYAIQSNLRNGLDLYSCSKIAGHENIQVTKRYLQGLEMENILEMAQKTSPLMNLR

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=297, Percent_Identity=22.8956228956229, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1790244, Length=232, Percent_Identity=22.4137931034483, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011932 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 35346; Mature: 35346

Theoretical pI: Translated: 9.76; Mature: 9.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKDLLKEFVFDLKIKNYSDRTIDTYNYNVGQLITYLNEHHEVNDVEDVATFHIKKFVQH
CHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
QISLGKKANYINTLIKSLRSFYKYLVVEEYVSVNIMNKIKLLKEDVEVIKTFTDDEVAKM
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
IEAYDFKTYLNARNKVIIAMFVDTGMRMSELINLQSSWIYDTSLRIKGKGSKWRHVPMSL
HHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHCEEEECEEEEECCCCCCCCCCHHH
MLKKYMIRYERIKAKYFEKKALEHDNYFLSRAGKPICTVQIENIVKIAGLRAGVREDIRC
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCEEEEEHHHHHHHHHHHHCCCCCCCC
SPHTVRHYAIQSNLRNGLDLYSCSKIAGHENIQVTKRYLQGLEMENILEMAQKTSPLMNL
CCHHHHHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCC
R
C
>Mature Secondary Structure
MLKDLLKEFVFDLKIKNYSDRTIDTYNYNVGQLITYLNEHHEVNDVEDVATFHIKKFVQH
CHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
QISLGKKANYINTLIKSLRSFYKYLVVEEYVSVNIMNKIKLLKEDVEVIKTFTDDEVAKM
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
IEAYDFKTYLNARNKVIIAMFVDTGMRMSELINLQSSWIYDTSLRIKGKGSKWRHVPMSL
HHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHCEEEECEEEEECCCCCCCCCCHHH
MLKKYMIRYERIKAKYFEKKALEHDNYFLSRAGKPICTVQIENIVKIAGLRAGVREDIRC
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCEEEEEHHHHHHHHHHHHCCCCCCCC
SPHTVRHYAIQSNLRNGLDLYSCSKIAGHENIQVTKRYLQGLEMENILEMAQKTSPLMNL
CCHHHHHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCC
R
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA