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The map label for this gene is yurK [H]

Identifier: 227817637

GI number: 227817637

Start: 4620018

End: 4620743

Strand: Reverse

Name: yurK [H]

Synonym: BAMEG_5131

Alternate gene names: 227817637

Gene position: 4620743-4620018 (Counterclockwise)

Preceding gene: 227817638

Following gene: 227817636

Centisome position: 88.35

GC content: 36.91

Gene sequence:

>726_bases
GTGGGTGTAACGGTGAACGTAACGAGGAAAAAAGGACCATTATATTTACAAATAAAAAACATTATTCGTGATCGAATATT
GCATGGTGTATATGCAATTCATACGAATATTCCTTCCGAACCGCAGTTAGAAGAAGAGTTCAAAGTGAGTAAAATTACAG
TACGAAATGCGATTAAAGAACTCGCTCAAGAAGGATATTTAGAAAAGAAAAGCGGTAAAGGAACGAAAGTCATCCGCAAT
ACTTCTGCGACAAAACTGTCAAAGGGAAAGAAATTTACTGAAGTGTTAGTGGAAGAAGGCTATAAAGTACAGAAGAAATT
GTTAAAAGCAGAAATCGTTCAGAATGAAGAAGGAACAGTGCCATTTCGATTATTCGGTAAAGAGAGTTTTCGTATTGAAC
GTTTATATACGTTAAATGATGCACCGTATATTCATTATACGCACTATTTTTCAGCGAAAATGGCAAGTACAGATTTATCG
GACTTTGACTTGCAATCGCTTTACGATTTAGTCGAGGACCGAGGCATTCATTTAGAAAACTTCAGAGATGAATTTGCTGT
TGGACTTGCGCCTAGTTTCGTTGCAGAAGCGTTAGGTGAAAAAGAGGGGACAGCGCTATTAAAACGTATGCGTTATTCTT
ACGATGAAGTTGGCGAAGTAATTGAATACAGCGAAGGCTACTACAATACAGAAATGCAGCATTATGTAGTGAATTATGAC
GTATAA

Upstream 100 bases:

>100_bases
CTGGAATGCTTGCACATACAATCGTCGGTGATACGCCAATGTCATCAGAGAAGGATATACTTCGGGCAATGACGGCATCA
GTAGGTGATGTAGAAAGGTA

Downstream 100 bases:

>100_bases
AAAAGAGGGGATTTTCCCTCTTTTTTTATAAAGTAAGGGGAATGGGAGATGGATATATACTTATTAATCGTCACATTACT
TGCAATTGCAATTGTCATTT

Product: transcriptional regulator, GntR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 240

Protein sequence:

>241_residues
MGVTVNVTRKKGPLYLQIKNIIRDRILHGVYAIHTNIPSEPQLEEEFKVSKITVRNAIKELAQEGYLEKKSGKGTKVIRN
TSATKLSKGKKFTEVLVEEGYKVQKKLLKAEIVQNEEGTVPFRLFGKESFRIERLYTLNDAPYIHYTHYFSAKMASTDLS
DFDLQSLYDLVEDRGIHLENFRDEFAVGLAPSFVAEALGEKEGTALLKRMRYSYDEVGEVIEYSEGYYNTEMQHYVVNYD
V

Sequences:

>Translated_241_residues
MGVTVNVTRKKGPLYLQIKNIIRDRILHGVYAIHTNIPSEPQLEEEFKVSKITVRNAIKELAQEGYLEKKSGKGTKVIRN
TSATKLSKGKKFTEVLVEEGYKVQKKLLKAEIVQNEEGTVPFRLFGKESFRIERLYTLNDAPYIHYTHYFSAKMASTDLS
DFDLQSLYDLVEDRGIHLENFRDEFAVGLAPSFVAEALGEKEGTALLKRMRYSYDEVGEVIEYSEGYYNTEMQHYVVNYD
V
>Mature_240_residues
GVTVNVTRKKGPLYLQIKNIIRDRILHGVYAIHTNIPSEPQLEEEFKVSKITVRNAIKELAQEGYLEKKSGKGTKVIRNT
SATKLSKGKKFTEVLVEEGYKVQKKLLKAEIVQNEEGTVPFRLFGKESFRIERLYTLNDAPYIHYTHYFSAKMASTDLSD
FDLQSLYDLVEDRGIHLENFRDEFAVGLAPSFVAEALGEKEGTALLKRMRYSYDEVGEVIEYSEGYYNTEMQHYVVNYDV

Specific function: Unknown

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790118, Length=235, Percent_Identity=25.1063829787234, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 27712; Mature: 27581

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGVTVNVTRKKGPLYLQIKNIIRDRILHGVYAIHTNIPSEPQLEEEFKVSKITVRNAIKE
CCEEEEEECCCCCEEEEHHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHHHHH
LAQEGYLEKKSGKGTKVIRNTSATKLSKGKKFTEVLVEEGYKVQKKLLKAEIVQNEEGTV
HHHCCCCCCCCCCCCEEEECCCHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCC
PFRLFGKESFRIERLYTLNDAPYIHYTHYFSAKMASTDLSDFDLQSLYDLVEDRGIHLEN
EEEEECCCCEEEEEEEEECCCCEEEEEEEEHHHHCCCCCCCCHHHHHHHHHHHCCCCHHH
FRDEFAVGLAPSFVAEALGEKEGTALLKRMRYSYDEVGEVIEYSEGYYNTEMQHYVVNYD
HHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCEEEEEEEEC
V
C
>Mature Secondary Structure 
GVTVNVTRKKGPLYLQIKNIIRDRILHGVYAIHTNIPSEPQLEEEFKVSKITVRNAIKE
CEEEEEECCCCCEEEEHHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHHHHH
LAQEGYLEKKSGKGTKVIRNTSATKLSKGKKFTEVLVEEGYKVQKKLLKAEIVQNEEGTV
HHHCCCCCCCCCCCCEEEECCCHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCC
PFRLFGKESFRIERLYTLNDAPYIHYTHYFSAKMASTDLSDFDLQSLYDLVEDRGIHLEN
EEEEECCCCEEEEEEEEECCCCEEEEEEEEHHHHCCCCCCCCHHHHHHHHHHHCCCCHHH
FRDEFAVGLAPSFVAEALGEKEGTALLKRMRYSYDEVGEVIEYSEGYYNTEMQHYVVNYD
HHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCEEEEEEEEC
V
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]