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The map label for this gene is 227817411

Identifier: 227817411

GI number: 227817411

Start: 4430092

End: 4430307

Strand: Direct

Name: 227817411

Synonym: BAMEG_4903

Alternate gene names: NA

Gene position: 4430092-4430307 (Clockwise)

Preceding gene: 227817404

Following gene: 227817412

Centisome position: 84.7

GC content: 33.8

Gene sequence:

>216_bases
TTGATTAAAAATAAGGTAAAACAATTCCGCGTCGTTAGAGACATCACCCAAGAACAATTAGCTTCCTCTGTTCAAATCAC
TAGACAATCCCTCATCGCTATCGAGAAGAATAAATACAACCCGAGTTTAGAATTAGCATTGAAATTATGTGAGTTTTTCA
ACTGTAAAGTAGAGGATTTATTTCAATTAGATAAAACTGGGGAGGAAAAAGAATGA

Upstream 100 bases:

>100_bases
ACGTAAAGCTTTGTTTACTTTTTGTAAAGTTTTATTTACTTATTACCTAAAAATGGATATAATAAATGTAACAAATTTAC
AAAAAGGAGACTTTGTATAT

Downstream 100 bases:

>100_bases
AAAATACTTTTAATCAAAAGTTCATTTCACATCTTACTTTTTTAGTGTTAGGATCATCTTTTCTTTATTTCAGTAGTAAT
GACGAAGAAAAGATTAGTTC

Product: DNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 71; Mature: 71

Protein sequence:

>71_residues
MIKNKVKQFRVVRDITQEQLASSVQITRQSLIAIEKNKYNPSLELALKLCEFFNCKVEDLFQLDKTGEEKE

Sequences:

>Translated_71_residues
MIKNKVKQFRVVRDITQEQLASSVQITRQSLIAIEKNKYNPSLELALKLCEFFNCKVEDLFQLDKTGEEKE
>Mature_71_residues
MIKNKVKQFRVVRDITQEQLASSVQITRQSLIAIEKNKYNPSLELALKLCEFFNCKVEDLFQLDKTGEEKE

Specific function: Unknown

COG id: COG1476

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 8319; Mature: 8319

Theoretical pI: Translated: 8.21; Mature: 8.21

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKNKVKQFRVVRDITQEQLASSVQITRQSLIAIEKNKYNPSLELALKLCEFFNCKVEDL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHH
FQLDKTGEEKE
HHHHCCCCCCC
>Mature Secondary Structure
MIKNKVKQFRVVRDITQEQLASSVQITRQSLIAIEKNKYNPSLELALKLCEFFNCKVEDL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHH
FQLDKTGEEKE
HHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]