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The map label for this gene is ccpN [H]

Identifier: 227817073

GI number: 227817073

Start: 4114313

End: 4114945

Strand: Reverse

Name: ccpN [H]

Synonym: BAMEG_4559

Alternate gene names: 227817073

Gene position: 4114945-4114313 (Counterclockwise)

Preceding gene: 227817074

Following gene: 227817072

Centisome position: 78.68

GC content: 35.7

Gene sequence:

>633_bases
GTGATTATCATAGAGCTGAATAAAAGACAAGAACATATCATTCAGATTGTAAAAGATCACGGTCCTATTACAGGGGAGTC
AATTGCTGCGCAATTGGGATTAACACGTGCAACGCTAAGGCCAGACTTAGCAATTTTAACGATGGCTGGTTATTTAGAAG
CACGTCCACGCGTAGGTTATTTTTATACGGGTAAAACTGGGGGGCAGTTATTATCTGAAGCTGTTAAGAAAATTAAAGTA
CAAGATTATCAATCTAGACCAGTCGTAATTGATAAAAATGTATCAGTATACGATGCGATTTGTACTATGTTTTTAGAGGA
TGTAGGTACATTATTCGTTGTAGATCAATCGACTCTATTAGTAGGCGTTGTATCTCGTAAAGATTTATTACGAGCTAGCT
TAGGAAAGCAGGATTTAACCTCACTTCCGGTTAATATTATCATGACAAGGATGCCAAACATTGCGATGTGTCGTAGAGAA
GATTCTTTATATGATATTGTGATGGAATTAATAGAAAGACAGATTGATGCGATGCCAGTTGTAAAAGATACGAAACAAGG
TTTAGAAGTGATTGGACGAATTACAAAAACAAATATTACACGTGCGTTTGTAAACTTAGTAAATAACGAATAA

Upstream 100 bases:

>100_bases
CCGTATACGGTCCTTTTTACATCCTTTCTTTTTCGAATAGCATATTTAGTATATAATATTTAAGAGATAGTATAACTTTT
TTCGTTGTGCATTAAAGGTG

Downstream 100 bases:

>100_bases
GTGTAATTTGTTTAAAGTGAGGTAATGTAATGGATAATAAAATCGTATATGTCGTATCTGACTCTGTAGGAGAAACGGCT
GATTTGGTTGTTCGAGCAGC

Product: CBS domain protein

Products: NA

Alternate protein names: Catabolite control protein N; Control catabolite protein of gluconeogenesis [H]

Number of amino acids: Translated: 210; Mature: 210

Protein sequence:

>210_residues
MIIIELNKRQEHIIQIVKDHGPITGESIAAQLGLTRATLRPDLAILTMAGYLEARPRVGYFYTGKTGGQLLSEAVKKIKV
QDYQSRPVVIDKNVSVYDAICTMFLEDVGTLFVVDQSTLLVGVVSRKDLLRASLGKQDLTSLPVNIIMTRMPNIAMCRRE
DSLYDIVMELIERQIDAMPVVKDTKQGLEVIGRITKTNITRAFVNLVNNE

Sequences:

>Translated_210_residues
MIIIELNKRQEHIIQIVKDHGPITGESIAAQLGLTRATLRPDLAILTMAGYLEARPRVGYFYTGKTGGQLLSEAVKKIKV
QDYQSRPVVIDKNVSVYDAICTMFLEDVGTLFVVDQSTLLVGVVSRKDLLRASLGKQDLTSLPVNIIMTRMPNIAMCRRE
DSLYDIVMELIERQIDAMPVVKDTKQGLEVIGRITKTNITRAFVNLVNNE
>Mature_210_residues
MIIIELNKRQEHIIQIVKDHGPITGESIAAQLGLTRATLRPDLAILTMAGYLEARPRVGYFYTGKTGGQLLSEAVKKIKV
QDYQSRPVVIDKNVSVYDAICTMFLEDVGTLFVVDQSTLLVGVVSRKDLLRASLGKQDLTSLPVNIIMTRMPNIAMCRRE
DSLYDIVMELIERQIDAMPVVKDTKQGLEVIGRITKTNITRAFVNLVNNE

Specific function: Transcription repressor that binds to the promoter of gapB and pckA genes, preventing their expression. Acts as a regulator for catabolite repression of gluconeogenic genes [H]

COG id: COG0517

COG function: function code R; FOG: CBS domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000644
- InterPro:   IPR013196
- InterPro:   IPR001034
- InterPro:   IPR016842
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00571 CBS; PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 23474; Mature: 23474

Theoretical pI: Translated: 8.66; Mature: 8.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIIELNKRQEHIIQIVKDHGPITGESIAAQLGLTRATLRPDLAILTMAGYLEARPRVGY
CEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHCCCHHEEEHHHHHHCCCCCCE
FYTGKTGGQLLSEAVKKIKVQDYQSRPVVIDKNVSVYDAICTMFLEDVGTLFVVDQSTLL
EEECCCHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHCCEEEEEECCEEE
VGVVSRKDLLRASLGKQDLTSLPVNIIMTRMPNIAMCRREDSLYDIVMELIERQIDAMPV
EEEHHHHHHHHHHCCHHHHHHCCHHHHHHCCCCCEECCCCCHHHHHHHHHHHHHHHCCCC
VKDTKQGLEVIGRITKTNITRAFVNLVNNE
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIIIELNKRQEHIIQIVKDHGPITGESIAAQLGLTRATLRPDLAILTMAGYLEARPRVGY
CEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHCCCHHEEEHHHHHHCCCCCCE
FYTGKTGGQLLSEAVKKIKVQDYQSRPVVIDKNVSVYDAICTMFLEDVGTLFVVDQSTLL
EEECCCHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHCCEEEEEECCEEE
VGVVSRKDLLRASLGKQDLTSLPVNIIMTRMPNIAMCRREDSLYDIVMELIERQIDAMPV
EEEHHHHHHHHHHCCHHHHHHCCHHHHHHCCCCCEECCCCCHHHHHHHHHHHHHHHCCCC
VKDTKQGLEVIGRITKTNITRAFVNLVNNE
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]