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The map label for this gene is fecI [C]

Identifier: 227816484

GI number: 227816484

Start: 3575779

End: 3576336

Strand: Reverse

Name: fecI [C]

Synonym: BAMEG_3941

Alternate gene names: 227816484

Gene position: 3576336-3575779 (Counterclockwise)

Preceding gene: 227816485

Following gene: 227816483

Centisome position: 68.38

GC content: 32.44

Gene sequence:

>558_bases
ATGAAAGTTACAGACAACGATTATGAAAAGATGGAAGAGCTATATGAGTTGTACGAACAAAAAGTTTATTATGTAGCTTA
TTCTATTTTAAATAATATTCAACAGGCTGAAGATGCGGTTCAAGAGACATTTATTACTCTTTATAAAAATTTGGAAAAGC
TTCATAACTTGAATATTCAAGAGTTTAAACGCTACATTTTGAGGGTCGCGAAAAACAAGGCGATTGATAGTTATCGGAAA
AATAAGCGACATGAAACATTTTTAGAAGAATATGAAAGAGAATCAATAGAAGCGGTAGATGAAAATATTGAAGAGTGGGA
AAAACGGAAAATGTCTGAAGTTCAAATTGATACATTGCTAAAAGAGTTAAATGAGTCTAATAGACAGGTGTTTAAGTACA
AAGTCTTCTATAACTTAACGTATCAAGAAATTTCAAGTGTCATGGGGATAAAGGAGGCTAATGTTCGCAAGCAGTTTGAA
CGCGCTCGAAAACGAGTCCAAAATATGATAGGAGGTATACAACATGACGAATTCAAAGAACTCCAAAGAAATATATGA

Upstream 100 bases:

>100_bases
GGGCTTTTTTATTCTATTATTAAATTTTATATATAAAAAGATTTTACAGTGTCACAAAGTATAGTGCTCATTCGTTATAT
AGAGTGAGAGGAGGAATTAT

Downstream 100 bases:

>100_bases
ATTTGCTGAAAAAATCGCTTTAGATGATTTTGATAAAATCGAAGAAAAACATGAATTTTCACATACATATACACGTAAAA
AGAAATTGTTTATGGAGGAA

Product: RNA polymerase sigma factor

Products: NA

Alternate protein names: DNA-Directed RNA Polymeracialized Sigma Subunit

Number of amino acids: Translated: 185; Mature: 185

Protein sequence:

>185_residues
MKVTDNDYEKMEELYELYEQKVYYVAYSILNNIQQAEDAVQETFITLYKNLEKLHNLNIQEFKRYILRVAKNKAIDSYRK
NKRHETFLEEYERESIEAVDENIEEWEKRKMSEVQIDTLLKELNESNRQVFKYKVFYNLTYQEISSVMGIKEANVRKQFE
RARKRVQNMIGGIQHDEFKELQRNI

Sequences:

>Translated_185_residues
MKVTDNDYEKMEELYELYEQKVYYVAYSILNNIQQAEDAVQETFITLYKNLEKLHNLNIQEFKRYILRVAKNKAIDSYRK
NKRHETFLEEYERESIEAVDENIEEWEKRKMSEVQIDTLLKELNESNRQVFKYKVFYNLTYQEISSVMGIKEANVRKQFE
RARKRVQNMIGGIQHDEFKELQRNI
>Mature_185_residues
MKVTDNDYEKMEELYELYEQKVYYVAYSILNNIQQAEDAVQETFITLYKNLEKLHNLNIQEFKRYILRVAKNKAIDSYRK
NKRHETFLEEYERESIEAVDENIEEWEKRKMSEVQIDTLLKELNESNRQVFKYKVFYNLTYQEISSVMGIKEANVRKQFE
RARKRVQNMIGGIQHDEFKELQRNI

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Regulates The Fec Genes For Iron Dicitrate Transport (Probable). [C]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22588; Mature: 22588

Theoretical pI: Translated: 5.85; Mature: 5.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVTDNDYEKMEELYELYEQKVYYVAYSILNNIQQAEDAVQETFITLYKNLEKLHNLNIQ
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
EFKRYILRVAKNKAIDSYRKNKRHETFLEEYERESIEAVDENIEEWEKRKMSEVQIDTLL
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KELNESNRQVFKYKVFYNLTYQEISSVMGIKEANVRKQFERARKRVQNMIGGIQHDEFKE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
LQRNI
HHHCC
>Mature Secondary Structure
MKVTDNDYEKMEELYELYEQKVYYVAYSILNNIQQAEDAVQETFITLYKNLEKLHNLNIQ
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
EFKRYILRVAKNKAIDSYRKNKRHETFLEEYERESIEAVDENIEEWEKRKMSEVQIDTLL
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KELNESNRQVFKYKVFYNLTYQEISSVMGIKEANVRKQFERARKRVQNMIGGIQHDEFKE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
LQRNI
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA