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The map label for this gene is ygzD [H]

Identifier: 227816443

GI number: 227816443

Start: 3534234

End: 3534452

Strand: Reverse

Name: ygzD [H]

Synonym: BAMEG_3900

Alternate gene names: 227816443

Gene position: 3534452-3534234 (Counterclockwise)

Preceding gene: 227816444

Following gene: 227816442

Centisome position: 67.58

GC content: 35.16

Gene sequence:

>219_bases
TTGACCATTTTAAATAGAGTGAAGGAATTAAGAGCTCGGTTTAATTTTTCGCAAAGTGTATTAGCAGAAAAAGTTGGAGT
GACGAGACAAACAATCGCGGCAATTGAAAAAGGGGATTATGTTCCTTCATTATTATTAGCGCTTATGATTTGCGATGTAT
TTCAGTTAAAGATGGAAGATGTGTTTGTTTTAAATAAGGAGGGGGAAGAGGATGAATAG

Upstream 100 bases:

>100_bases
CTTTACATATTGTAAAGTTGGATTTTTTTGTGAAAATAATGTTAAGTTGAGTTTACATTTTGTTAAGGATAGCATACAAT
AAAATTGAGAGGTGGTAAAT

Downstream 100 bases:

>100_bases
ACTTGTATTTTCCTATATGTTGAATGTACTTTTAATGGTATTAGCAGGTTGGGCATTTATTGAGTTGTATTATTTTACTA
TTGAAGTTGCTAATTTTATT

Product: DNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 72; Mature: 71

Protein sequence:

>72_residues
MTILNRVKELRARFNFSQSVLAEKVGVTRQTIAAIEKGDYVPSLLLALMICDVFQLKMEDVFVLNKEGEEDE

Sequences:

>Translated_72_residues
MTILNRVKELRARFNFSQSVLAEKVGVTRQTIAAIEKGDYVPSLLLALMICDVFQLKMEDVFVLNKEGEEDE
>Mature_71_residues
TILNRVKELRARFNFSQSVLAEKVGVTRQTIAAIEKGDYVPSLLLALMICDVFQLKMEDVFVLNKEGEEDE

Specific function: Unknown

COG id: COG1476

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 8205; Mature: 8073

Theoretical pI: Translated: 4.54; Mature: 4.54

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTILNRVKELRARFNFSQSVLAEKVGVTRQTIAAIEKGDYVPSLLLALMICDVFQLKMED
CCHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
VFVLNKEGEEDE
HEEECCCCCCCC
>Mature Secondary Structure 
TILNRVKELRARFNFSQSVLAEKVGVTRQTIAAIEKGDYVPSLLLALMICDVFQLKMED
CHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
VFVLNKEGEEDE
HEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]