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The map label for this gene is ykoX [H]

Identifier: 227816317

GI number: 227816317

Start: 3413838

End: 3414443

Strand: Reverse

Name: ykoX [H]

Synonym: BAMEG_3745

Alternate gene names: 227816317

Gene position: 3414443-3413838 (Counterclockwise)

Preceding gene: 227816318

Following gene: 227816316

Centisome position: 65.28

GC content: 36.96

Gene sequence:

>606_bases
ATGGAGCAAATTATTTTAGATATAATTGAGTTTTTAAAGCAGTTTTCTTATTTTGGAGTTGTATTGGCTTTAACGTTTGA
ATTTATTCCGGCAGAAGTCGTTTTGCCTATGGTTGGGTATTGGGTATACGAGGGAGATATGAATTTTTGGCTAGCTGTAT
TAGCTGGAACACTTGGCGGAACGACAGGACCGTTAACGTTATATGCACTCGGTTATTACGGTGGTCGTCCTCTATTAATA
AAGTACGGGAAATACTTCTTTATTAAAGAAGAACAAATTCAAAAAGCAGATGATTTCTTTGAGAAATATGGACCAGTTGT
AGCATTTGTTGGACGCTTTGTACCTGGCGTTCGAACGCTTATTTCTGTTCCATGTGGTATGGCGAAAATGAACATATGGA
AATTTAGTATCTATACATTTGTAGCAATGTTCCCGTTAACAACTTTATATGTCTATTTTGGAATGAAATTAGGTCCGCAT
TGGGAAAAAGCGGCGGATGTTGTGGGGCAATATATGCTACCGATATTACTAGTCGTCGTTATCGTTGTCGGCGGTATTTT
AATCTATAAATTTATGAAAAAAAGGAACAGCACGGAATCTATCTAG

Upstream 100 bases:

>100_bases
GATATTGGGATTGTGTTATTTATTTTGAACCGAATTGTAAAAATGGCGCCAGTTCAATTACAAGAAAAGCATAATGTGAA
CGTAGGATAGGAGTTAAAAT

Downstream 100 bases:

>100_bases
TCATTGATATTTGTATATTTTTTGAAAATAGATGAATAGTACAGGCAAAAGACTCTGAAGGACATACACATATAGGGAAT
AAAAAAGAGAGAGGGGAAAC

Product: dedA family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 201; Mature: 201

Protein sequence:

>201_residues
MEQIILDIIEFLKQFSYFGVVLALTFEFIPAEVVLPMVGYWVYEGDMNFWLAVLAGTLGGTTGPLTLYALGYYGGRPLLI
KYGKYFFIKEEQIQKADDFFEKYGPVVAFVGRFVPGVRTLISVPCGMAKMNIWKFSIYTFVAMFPLTTLYVYFGMKLGPH
WEKAADVVGQYMLPILLVVVIVVGGILIYKFMKKRNSTESI

Sequences:

>Translated_201_residues
MEQIILDIIEFLKQFSYFGVVLALTFEFIPAEVVLPMVGYWVYEGDMNFWLAVLAGTLGGTTGPLTLYALGYYGGRPLLI
KYGKYFFIKEEQIQKADDFFEKYGPVVAFVGRFVPGVRTLISVPCGMAKMNIWKFSIYTFVAMFPLTTLYVYFGMKLGPH
WEKAADVVGQYMLPILLVVVIVVGGILIYKFMKKRNSTESI
>Mature_201_residues
MEQIILDIIEFLKQFSYFGVVLALTFEFIPAEVVLPMVGYWVYEGDMNFWLAVLAGTLGGTTGPLTLYALGYYGGRPLLI
KYGKYFFIKEEQIQKADDFFEKYGPVVAFVGRFVPGVRTLISVPCGMAKMNIWKFSIYTFVAMFPLTTLYVYFGMKLGPH
WEKAADVVGQYMLPILLVVVIVVGGILIYKFMKKRNSTESI

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 22820; Mature: 22820

Theoretical pI: Translated: 8.78; Mature: 8.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQIILDIIEFLKQFSYFGVVLALTFEFIPAEVVLPMVGYWVYEGDMNFWLAVLAGTLGG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHCCC
TTGPLTLYALGYYGGRPLLIKYGKYFFIKEEQIQKADDFFEKYGPVVAFVGRFVPGVRTL
CCCCHHHHEEHHCCCCEEEEECCCEEEEEHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
ISVPCGMAKMNIWKFSIYTFVAMFPLTTLYVYFGMKLGPHWEKAADVVGQYMLPILLVVV
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
IVVGGILIYKFMKKRNSTESI
HHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MEQIILDIIEFLKQFSYFGVVLALTFEFIPAEVVLPMVGYWVYEGDMNFWLAVLAGTLGG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHCCC
TTGPLTLYALGYYGGRPLLIKYGKYFFIKEEQIQKADDFFEKYGPVVAFVGRFVPGVRTL
CCCCHHHHEEHHCCCCEEEEECCCEEEEEHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
ISVPCGMAKMNIWKFSIYTFVAMFPLTTLYVYFGMKLGPHWEKAADVVGQYMLPILLVVV
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
IVVGGILIYKFMKKRNSTESI
HHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]