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The map label for this gene is yvdT [H]

Identifier: 227816295

GI number: 227816295

Start: 3395963

End: 3396538

Strand: Reverse

Name: yvdT [H]

Synonym: BAMEG_3723

Alternate gene names: 227816295

Gene position: 3396538-3395963 (Counterclockwise)

Preceding gene: 227816296

Following gene: 227816294

Centisome position: 64.94

GC content: 36.98

Gene sequence:

>576_bases
ATGAATAAAAAAGAAAAAATTGTCTATGCAGCGATTGAAGTGTTTCAGGAAAAGGGCGTTGAAAAAACGAAGATTTCTGA
TATCGTGAAATTGGCTGGCATTGCACAAGGCACTTTCTATTTATATTTTCCTTCTAAGTTATCTGTTATGCCTGCAATAG
CAGAGGTGATGGTTGAAAAGATGATACTTGCGGTGAAAGAGAAAGTGCAAAATGATGCGCCTTTCTCAAGTAAAGTTACG
CAAGTAATAGATGCGGTATTTCATTTCATAGAGGAATATCGTGAAATACAAGCTTTAATGTATGCGGGTCTTGCATCTAC
AGAACATATAAAAGAATGGGAAGCTGTGTATGAGCCTCTTTATATGTGGCTAAGTGAATTTTTAAGTGAGGCGAAAGAAG
CCGGTGAAATTCGTGAGTCGGTACACGCAGAGCGAACAGCGAAGTTATTTATTGCTCTTGTTGAATCAGCAGCGGAACAA
GTTTATTTATATGATCATAAAGATGATGAGCAAGTCGAGCTACAAAAGGCAGAAGTACTAGATTTTTTAACACATGCACT
ACATATAAAGAAATAG

Upstream 100 bases:

>100_bases
AGATTTTTATTGTAAAAAGTACACGATAATTGACAGTATAGCTAGTTATTCTATAAAATGAGTGACAGTCATTCAATACG
TGTTTGAAAGGATTTAGATG

Downstream 100 bases:

>100_bases
TGGGATGAACCTGTCTGAAAAGGTAGGTTTATTTTTGAGGAAAACTGAATGATAGTCATTCACCTAATACTTATGTATGT
GTGAAAGGATAGAGTGAAAT

Product: transcriptional regulator, TetR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 191; Mature: 191

Protein sequence:

>191_residues
MNKKEKIVYAAIEVFQEKGVEKTKISDIVKLAGIAQGTFYLYFPSKLSVMPAIAEVMVEKMILAVKEKVQNDAPFSSKVT
QVIDAVFHFIEEYREIQALMYAGLASTEHIKEWEAVYEPLYMWLSEFLSEAKEAGEIRESVHAERTAKLFIALVESAAEQ
VYLYDHKDDEQVELQKAEVLDFLTHALHIKK

Sequences:

>Translated_191_residues
MNKKEKIVYAAIEVFQEKGVEKTKISDIVKLAGIAQGTFYLYFPSKLSVMPAIAEVMVEKMILAVKEKVQNDAPFSSKVT
QVIDAVFHFIEEYREIQALMYAGLASTEHIKEWEAVYEPLYMWLSEFLSEAKEAGEIRESVHAERTAKLFIALVESAAEQ
VYLYDHKDDEQVELQKAEVLDFLTHALHIKK
>Mature_191_residues
MNKKEKIVYAAIEVFQEKGVEKTKISDIVKLAGIAQGTFYLYFPSKLSVMPAIAEVMVEKMILAVKEKVQNDAPFSSKVT
QVIDAVFHFIEEYREIQALMYAGLASTEHIKEWEAVYEPLYMWLSEFLSEAKEAGEIRESVHAERTAKLFIALVESAAEQ
VYLYDHKDDEQVELQKAEVLDFLTHALHIKK

Specific function: Repressor For The Uidrabc (Gusrabc) Operon. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 21878; Mature: 21878

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKKEKIVYAAIEVFQEKGVEKTKISDIVKLAGIAQGTFYLYFPSKLSVMPAIAEVMVEK
CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHHH
MILAVKEKVQNDAPFSSKVTQVIDAVFHFIEEYREIQALMYAGLASTEHIKEWEAVYEPL
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
YMWLSEFLSEAKEAGEIRESVHAERTAKLFIALVESAAEQVYLYDHKDDEQVELQKAEVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHH
DFLTHALHIKK
HHHHHHHHCCC
>Mature Secondary Structure
MNKKEKIVYAAIEVFQEKGVEKTKISDIVKLAGIAQGTFYLYFPSKLSVMPAIAEVMVEK
CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHHH
MILAVKEKVQNDAPFSSKVTQVIDAVFHFIEEYREIQALMYAGLASTEHIKEWEAVYEPL
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
YMWLSEFLSEAKEAGEIRESVHAERTAKLFIALVESAAEQVYLYDHKDDEQVELQKAEVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHH
DFLTHALHIKK
HHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]