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The map label for this gene is hemZ [H]

Identifier: 227816258

GI number: 227816258

Start: 3354640

End: 3356127

Strand: Reverse

Name: hemZ [H]

Synonym: BAMEG_3685

Alternate gene names: 227816258

Gene position: 3356127-3354640 (Counterclockwise)

Preceding gene: 227816261

Following gene: 227816257

Centisome position: 64.17

GC content: 36.83

Gene sequence:

>1488_bases
TTGTTAATTTCAATTAAAACGTTACAAGATGATCGTTTTTTACGTCCGCTGCAAAATATTAGCGGCTTATTTTTTGAAGA
TAGTACGATTGGATTTGAACAAGAGGAAGCAAATCTTATCGTTGATATACACATTGAAGAGAATGTGAAAGCATCAGCTC
GTTTAACAGATGTTGCGACTGGAAATGTGTATGAAGAAACATTCGCAAAAGATTTATCTGCTTTTACAGATGAAAAAGAG
CGTATGAAGCAAGTGAAGCACGTTGTTTCTTATGTATATCTTTCTGTTCTTCAGCAGTTAACTGGTATTGAGCAAAGCTG
GGGTATTTTAACGGGAGTTCGTCCGACAAAACTTCTTCATAAAATGCTTCAAAATGGTATGTCAAAAGAAGAGGCGCACC
AAGAACTTCGTGAAAGTTATTTAATTCATGAAGAGAAAATTGAACTTCTTCAGCGTATTGTTGACTGCCAATTAGCGGTA
GTTCCGGATTTATATCGTTTGAAAGAGGAAGTAAGTATTTATATCGGTATTCCATTCTGCCCAACAAAATGTGCATATTG
TACATTCCCAGCGTATGCAATTAACGGACGTCAAGGTTCTGTTGATTCATTCTTAGGTGGTTTACATTATGAAGTTCGTG
AAATTGGTAAGTTTTTAAAAGAAAAAGGTGTAACAGTTACGACGATTTATTACGGCGGCGGTACACCGACAAGTATTACA
GCAGAAGAGATGGATATGCTGTATGAAGAAATGTATGAAGCGTTCCCAGATGTGAAAAATGTGCGTGAAGTAACAGTTGA
GGCAGGTCGCCCAGATACAATTACGCCAGCGAAGCTAGAAGTGTTAAATAAATGGAATATTGACCGTATTAGTATTAATC
CGCAGTCATACCATCAAGAAACATTAAAAGCAATTGGGCGTCACCATACTGTAGAAGAAACAATTGAGAAGTACCACTTA
GCTCGTGAAATGGGAATGAACAATATTAATATGGACTTAATTATTGGTCTTCCTGGTGAAGGGTTAGATATCTTCAAGCA
CACATTAGATGAAACAGAAAAGTTAATGCCAGAATCGTTAACAGTTCATACGTTATCATTTAAACGCGCTTCTGAAATGA
CGCAAAACAAACGTAAATATAAAGTAGCAGGTCGCGAAGAAATTACAGCGATGATGCACGAAGCAGAAGAGTGGACGCAA
AAGCATAATTACGTACCATATTACCTATACCGTCAAAAGAATATTTTAGGTAACTTAGAGAACGTTGGTTACGCAATGCC
GACGCAAGAAAGTATTTACAACATTGTCATTATGGAAGAAGTACAATCGATTATCGGACTTGGCTGTGGTGCATCAAGTA
AATTTGTTCATCCGAAGACAGGTGCAATTACGCACTTTGCTAATCCGAAAGATCCAAAATCATATAACGATGGCTTCGTA
AAATATACAGAAGACAAACTGAAAATTTTAGAAGAGCTATTTGCATAA

Upstream 100 bases:

>100_bases
TTTTAAATAGGATATTAAAATAAGGTAAAACCTTCTGTATTGACCTGCAAACGCCCTTCAAGTAAACTAAAGAGAGTTTG
CAAATGAAAAGGTGATAATG

Downstream 100 bases:

>100_bases
GAAGAAAGGAGCTGTTCCGAGTCGGGACAGCTTCTTTTTTATCTTGTCAGTTTTTGTCGGTAAGTCGATATATTCGAAAA
ATCGCTGATATAATTCAAGT

Product: coproporphyrinogen III oxidase

Products: NA

Alternate protein names: Coprogen oxidase; Coproporphyrinogenase [H]

Number of amino acids: Translated: 495; Mature: 495

Protein sequence:

>495_residues
MLISIKTLQDDRFLRPLQNISGLFFEDSTIGFEQEEANLIVDIHIEENVKASARLTDVATGNVYEETFAKDLSAFTDEKE
RMKQVKHVVSYVYLSVLQQLTGIEQSWGILTGVRPTKLLHKMLQNGMSKEEAHQELRESYLIHEEKIELLQRIVDCQLAV
VPDLYRLKEEVSIYIGIPFCPTKCAYCTFPAYAINGRQGSVDSFLGGLHYEVREIGKFLKEKGVTVTTIYYGGGTPTSIT
AEEMDMLYEEMYEAFPDVKNVREVTVEAGRPDTITPAKLEVLNKWNIDRISINPQSYHQETLKAIGRHHTVEETIEKYHL
AREMGMNNINMDLIIGLPGEGLDIFKHTLDETEKLMPESLTVHTLSFKRASEMTQNKRKYKVAGREEITAMMHEAEEWTQ
KHNYVPYYLYRQKNILGNLENVGYAMPTQESIYNIVIMEEVQSIIGLGCGASSKFVHPKTGAITHFANPKDPKSYNDGFV
KYTEDKLKILEELFA

Sequences:

>Translated_495_residues
MLISIKTLQDDRFLRPLQNISGLFFEDSTIGFEQEEANLIVDIHIEENVKASARLTDVATGNVYEETFAKDLSAFTDEKE
RMKQVKHVVSYVYLSVLQQLTGIEQSWGILTGVRPTKLLHKMLQNGMSKEEAHQELRESYLIHEEKIELLQRIVDCQLAV
VPDLYRLKEEVSIYIGIPFCPTKCAYCTFPAYAINGRQGSVDSFLGGLHYEVREIGKFLKEKGVTVTTIYYGGGTPTSIT
AEEMDMLYEEMYEAFPDVKNVREVTVEAGRPDTITPAKLEVLNKWNIDRISINPQSYHQETLKAIGRHHTVEETIEKYHL
AREMGMNNINMDLIIGLPGEGLDIFKHTLDETEKLMPESLTVHTLSFKRASEMTQNKRKYKVAGREEITAMMHEAEEWTQ
KHNYVPYYLYRQKNILGNLENVGYAMPTQESIYNIVIMEEVQSIIGLGCGASSKFVHPKTGAITHFANPKDPKSYNDGFV
KYTEDKLKILEELFA
>Mature_495_residues
MLISIKTLQDDRFLRPLQNISGLFFEDSTIGFEQEEANLIVDIHIEENVKASARLTDVATGNVYEETFAKDLSAFTDEKE
RMKQVKHVVSYVYLSVLQQLTGIEQSWGILTGVRPTKLLHKMLQNGMSKEEAHQELRESYLIHEEKIELLQRIVDCQLAV
VPDLYRLKEEVSIYIGIPFCPTKCAYCTFPAYAINGRQGSVDSFLGGLHYEVREIGKFLKEKGVTVTTIYYGGGTPTSIT
AEEMDMLYEEMYEAFPDVKNVREVTVEAGRPDTITPAKLEVLNKWNIDRISINPQSYHQETLKAIGRHHTVEETIEKYHL
AREMGMNNINMDLIIGLPGEGLDIFKHTLDETEKLMPESLTVHTLSFKRASEMTQNKRKYKVAGREEITAMMHEAEEWTQ
KHNYVPYYLYRQKNILGNLENVGYAMPTQESIYNIVIMEEVQSIIGLGCGASSKFVHPKTGAITHFANPKDPKSYNDGFV
KYTEDKLKILEELFA

Specific function: Anaerobic transformation of coproporphyrinogen-III into protoporphyrinogen-IX [H]

COG id: COG0635

COG function: function code H; Coproporphyrinogen III oxidase and related Fe-S oxidoreductases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the anaerobic coproporphyrinogen-III oxidase family [H]

Homologues:

Organism=Homo sapiens, GI8922911, Length=302, Percent_Identity=24.1721854304636, Blast_Score=81, Evalue=2e-15,
Organism=Escherichia coli, GI1789325, Length=322, Percent_Identity=26.3975155279503, Blast_Score=108, Evalue=5e-25,
Organism=Escherichia coli, GI87082341, Length=192, Percent_Identity=28.125, Blast_Score=85, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006638
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: =1.3.99.22 [H]

Molecular weight: Translated: 56577; Mature: 56577

Theoretical pI: Translated: 5.30; Mature: 5.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLISIKTLQDDRFLRPLQNISGLFFEDSTIGFEQEEANLIVDIHIEENVKASARLTDVAT
CEEEEEECCCCHHHHHHHHCCCCEEECCCCCCCCCCCCEEEEEEECCCCCCCCEEEECCC
GNVYEETFAKDLSAFTDEKERMKQVKHVVSYVYLSVLQQLTGIEQSWGILTGVRPTKLLH
CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCHHCCCCHHHHHH
KMLQNGMSKEEAHQELRESYLIHEEKIELLQRIVDCQLAVVPDLYRLKEEVSIYIGIPFC
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCC
PTKCAYCTFPAYAINGRQGSVDSFLGGLHYEVREIGKFLKEKGVTVTTIYYGGGTPTSIT
CCCCCEECCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCC
AEEMDMLYEEMYEAFPDVKNVREVTVEAGRPDTITPAKLEVLNKWNIDRISINPQSYHQE
HHHHHHHHHHHHHHCCCHHHHHHHHEECCCCCCCCHHHHHHHHCCCCEEEEECHHHHHHH
TLKAIGRHHTVEETIEKYHLAREMGMNNINMDLIIGLPGEGLDIFKHTLDETEKLMPESL
HHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCE
TVHTLSFKRASEMTQNKRKYKVAGREEITAMMHEAEEWTQKHNYVPYYLYRQKNILGNLE
EEEEEHHHHHHHHHHCCHHEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEECHHHHCCHH
NVGYAMPTQESIYNIVIMEEVQSIIGLGCGASSKFVHPKTGAITHFANPKDPKSYNDGFV
HCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCE
KYTEDKLKILEELFA
EECHHHHHHHHHHHC
>Mature Secondary Structure
MLISIKTLQDDRFLRPLQNISGLFFEDSTIGFEQEEANLIVDIHIEENVKASARLTDVAT
CEEEEEECCCCHHHHHHHHCCCCEEECCCCCCCCCCCCEEEEEEECCCCCCCCEEEECCC
GNVYEETFAKDLSAFTDEKERMKQVKHVVSYVYLSVLQQLTGIEQSWGILTGVRPTKLLH
CCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCHHCCCCHHHHHH
KMLQNGMSKEEAHQELRESYLIHEEKIELLQRIVDCQLAVVPDLYRLKEEVSIYIGIPFC
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCC
PTKCAYCTFPAYAINGRQGSVDSFLGGLHYEVREIGKFLKEKGVTVTTIYYGGGTPTSIT
CCCCCEECCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCC
AEEMDMLYEEMYEAFPDVKNVREVTVEAGRPDTITPAKLEVLNKWNIDRISINPQSYHQE
HHHHHHHHHHHHHHCCCHHHHHHHHEECCCCCCCCHHHHHHHHCCCCEEEEECHHHHHHH
TLKAIGRHHTVEETIEKYHLAREMGMNNINMDLIIGLPGEGLDIFKHTLDETEKLMPESL
HHHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCE
TVHTLSFKRASEMTQNKRKYKVAGREEITAMMHEAEEWTQKHNYVPYYLYRQKNILGNLE
EEEEEHHHHHHHHHHCCHHEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEECHHHHCCHH
NVGYAMPTQESIYNIVIMEEVQSIIGLGCGASSKFVHPKTGAITHFANPKDPKSYNDGFV
HCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCE
KYTEDKLKILEELFA
EECHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377; 10568751 [H]