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The map label for this gene is ydcM [C]

Identifier: 227816134

GI number: 227816134

Start: 3237702

End: 3238832

Strand: Reverse

Name: ydcM [C]

Synonym: BAMEG_3560

Alternate gene names: 227816134

Gene position: 3238832-3237702 (Counterclockwise)

Preceding gene: 227816135

Following gene: 227816133

Centisome position: 61.93

GC content: 35.54

Gene sequence:

>1131_bases
ATGATATTGGCGAAGAAAGTTAGACTGATTCCAACGCCTGAACAAGAACAAGTGCTTAGAAACCATGCCGGTGCTGCAAG
ATTCGCTTATAACTATTGTAAAAGAATGAGTGATAGATACTATAAGCTATTTGGAAAATCTGTTTCACAGTTAGCTTTAC
AGAAACGATTTACAAAGATCAAGAAGCGAAAGAGATATGAATGGTTAAATGACATCAACGCACAAGTTCCCAAACAGGCT
TCAAAAGATTTTGATAAGGCGAGAAAACATTCGTTCAAAAAGTACAAAAATGGGTATCACACTTCTTATAAATCAAAAAA
AGATTTAATCCAAGGATTTTATGCCAATTATGAAAGACTGATTATAGGAAAGAAAGTCGTTCATATTCAGTCTATTGGAG
AAGTGAAAACAAGCCAACAACTACCAAGAAACAAAAAACCATTCAATCCAAGAGTTACCTTTGATGGTCGTCACTGGTGG
ATTAGTGTAGGATTCCAAGAATTCTTTGAATCACAAGAACTAACGAATGAGTCGATTGGTGTGGATGTTGGTTTAAAAGA
GCTGTTTGTAGCTTCTAATGGTACGAAAGAACGAAATATAAACAAAGATGCCAAGGTTAAAAAACTTTTGAAAAGGAAAA
AGTCAGCGCAAAGAGATATGTCTAGGAGATTTAAAAAAGGTGTAAAAACTCAATCTGCCGGATATGAAAAAGCGAAAGCT
GAGCACCTGCGGTTATCTAGGAAAATTAAGAATATCCGAAATAACCATATCCATCAAGCAACAGCTAAATTGGTGAAAAC
CAAACCAATGAGGATTGTTGTGGAAGACTTATCTATCTCAAACCTGTTAAAAAACAAAAAACTATCGAAAGCATTTTTAT
TTCAAAAATTAAACTTCTTCTTTCAATGTTTATCATACAAGTGCGAGAAGTATGGCGTTGCGTATGTAAAAGCTGATAAA
TGGTTCGCCTCAAGCAAGATTTGCTCATGTTGCGGCGTGAAATACGAGCATTCCGTTCAACCAGAAGGACAGTGGAGTTT
AAAAATACGTGAGTGGCGTTGTGTTCCATGCAATAGCCATCACGATAGGGATTTGAATGCTTCGATAAATTTATCAAGAT
GGGTAAAATAA

Upstream 100 bases:

>100_bases
CAGAATTAACAGGTTTGCATCCGAGTGCTCTCAGGAGAATGCTGGTGGAACACGCTACTATTCAGAAGAACAAATCTTTC
ATTAAAGGAGTTACATTCTA

Downstream 100 bases:

>100_bases
ATGCTTGATAATAGGAGGTAACGATACTGCCTCGTGTGGAGTGTTATACCCCTCGTCCCTTCGGGGCTGCGAGAACACTT
TGAAGCACTAACTTGTGTAA

Product: transposase, IS605 family

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 376; Mature: 376

Protein sequence:

>376_residues
MILAKKVRLIPTPEQEQVLRNHAGAARFAYNYCKRMSDRYYKLFGKSVSQLALQKRFTKIKKRKRYEWLNDINAQVPKQA
SKDFDKARKHSFKKYKNGYHTSYKSKKDLIQGFYANYERLIIGKKVVHIQSIGEVKTSQQLPRNKKPFNPRVTFDGRHWW
ISVGFQEFFESQELTNESIGVDVGLKELFVASNGTKERNINKDAKVKKLLKRKKSAQRDMSRRFKKGVKTQSAGYEKAKA
EHLRLSRKIKNIRNNHIHQATAKLVKTKPMRIVVEDLSISNLLKNKKLSKAFLFQKLNFFFQCLSYKCEKYGVAYVKADK
WFASSKICSCCGVKYEHSVQPEGQWSLKIREWRCVPCNSHHDRDLNASINLSRWVK

Sequences:

>Translated_376_residues
MILAKKVRLIPTPEQEQVLRNHAGAARFAYNYCKRMSDRYYKLFGKSVSQLALQKRFTKIKKRKRYEWLNDINAQVPKQA
SKDFDKARKHSFKKYKNGYHTSYKSKKDLIQGFYANYERLIIGKKVVHIQSIGEVKTSQQLPRNKKPFNPRVTFDGRHWW
ISVGFQEFFESQELTNESIGVDVGLKELFVASNGTKERNINKDAKVKKLLKRKKSAQRDMSRRFKKGVKTQSAGYEKAKA
EHLRLSRKIKNIRNNHIHQATAKLVKTKPMRIVVEDLSISNLLKNKKLSKAFLFQKLNFFFQCLSYKCEKYGVAYVKADK
WFASSKICSCCGVKYEHSVQPEGQWSLKIREWRCVPCNSHHDRDLNASINLSRWVK
>Mature_376_residues
MILAKKVRLIPTPEQEQVLRNHAGAARFAYNYCKRMSDRYYKLFGKSVSQLALQKRFTKIKKRKRYEWLNDINAQVPKQA
SKDFDKARKHSFKKYKNGYHTSYKSKKDLIQGFYANYERLIIGKKVVHIQSIGEVKTSQQLPRNKKPFNPRVTFDGRHWW
ISVGFQEFFESQELTNESIGVDVGLKELFVASNGTKERNINKDAKVKKLLKRKKSAQRDMSRRFKKGVKTQSAGYEKAKA
EHLRLSRKIKNIRNNHIHQATAKLVKTKPMRIVVEDLSISNLLKNKKLSKAFLFQKLNFFFQCLSYKCEKYGVAYVKADK
WFASSKICSCCGVKYEHSVQPEGQWSLKIREWRCVPCNSHHDRDLNASINLSRWVK

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=371, Percent_Identity=24.2587601078167, Blast_Score=71, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 44112; Mature: 44112

Theoretical pI: Translated: 10.84; Mature: 10.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILAKKVRLIPTPEQEQVLRNHAGAARFAYNYCKRMSDRYYKLFGKSVSQLALQKRFTKI
CCCCCCEEECCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KKRKRYEWLNDINAQVPKQASKDFDKARKHSFKKYKNGYHTSYKSKKDLIQGFYANYERL
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCHHHH
IIGKKVVHIQSIGEVKTSQQLPRNKKPFNPRVTFDGRHWWISVGFQEFFESQELTNESIG
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCEEEEECCHHHHHHHHHHCCCCCC
VDVGLKELFVASNGTKERNINKDAKVKKLLKRKKSAQRDMSRRFKKGVKTQSAGYEKAKA
CCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
EHLRLSRKIKNIRNNHIHQATAKLVKTKPMRIVVEDLSISNLLKNKKLSKAFLFQKLNFF
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
FQCLSYKCEKYGVAYVKADKWFASSKICSCCGVKYEHSVQPEGQWSLKIREWRCVPCNSH
HHHHHHHHHHCCEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEEECCCCC
HDRDLNASINLSRWVK
CCCCCCCCCCHHHCCC
>Mature Secondary Structure
MILAKKVRLIPTPEQEQVLRNHAGAARFAYNYCKRMSDRYYKLFGKSVSQLALQKRFTKI
CCCCCCEEECCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KKRKRYEWLNDINAQVPKQASKDFDKARKHSFKKYKNGYHTSYKSKKDLIQGFYANYERL
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCHHHH
IIGKKVVHIQSIGEVKTSQQLPRNKKPFNPRVTFDGRHWWISVGFQEFFESQELTNESIG
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCEEEEECCHHHHHHHHHHCCCCCC
VDVGLKELFVASNGTKERNINKDAKVKKLLKRKKSAQRDMSRRFKKGVKTQSAGYEKAKA
CCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
EHLRLSRKIKNIRNNHIHQATAKLVKTKPMRIVVEDLSISNLLKNKKLSKAFLFQKLNFF
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
FQCLSYKCEKYGVAYVKADKWFASSKICSCCGVKYEHSVQPEGQWSLKIREWRCVPCNSH
HHHHHHHHHHCCEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEEECCCCC
HDRDLNASINLSRWVK
CCCCCCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]