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The map label for this gene is ydeE [H]

Identifier: 227816039

GI number: 227816039

Start: 3147142

End: 3148032

Strand: Reverse

Name: ydeE [H]

Synonym: BAMEG_3465

Alternate gene names: 227816039

Gene position: 3148032-3147142 (Counterclockwise)

Preceding gene: 227816042

Following gene: 227816038

Centisome position: 60.19

GC content: 38.5

Gene sequence:

>891_bases
ATGGAAAGTTATGAAACACAAATTCAAAGGTCCATTGATTATATCGAGGAAGATGTAATGGAAAAACAGACGCTGCGTAA
TTTAGCTCGCATTGCAGGTTTTTCTGAGTCGCATTTTCATCGTGTATTCCAGGCGTTAGTAGGTGATACGGTAATGGAGT
ATGTCCGAAAGAGGAGGTTAGCCCGGGCAGCTTATCAACTTTCTCATACGGATGAAAAAATTATTGATATCGCATTTGAG
CATGGCTTTCAATCTCACGAAACGTTCACGAGAGCCTTTAAAAAATTATTTCAAATGACACCGAGTGAATATCGAAAGCA
GGAAATAGAAACACCGATGTATTACAGCGTGAATGTAAAGCAAAGAAAATTAAATCCGTATTTAGGAGGCATACAAATGG
AATATCGTATTGTAAATAAACCAGAATTTTTAATGGCGGGTTATGAACTGAAGACGACAAGTAAAGAAGGGAAGAATCAT
CAAGACATTCCAGCATTTTGGCAAGAATATTTACAAAAAGATCTTGGAACAACGATTCCGAATCGTAAAGATACGAGCCA
ATGGGTAGAGCTTGGATTATGTACTGATTTTAATTTAGAAACAGGGGACTTCACTTATATTATTGGAATGGAAGTTACAG
ACTTTGAAAATGTACCAAATGAAATTGCAAAGCGTACGTTCCCAGCAGCAACATATGCAGTATTTACACGCCGAAAGTTC
CTCATGAAGAAATGGTATCGTCTATTCACCAAACATGGAATGCAGTATTCTCAGAGTGGTTCCCGCATTCAGGATACGAA
CATTGCGGCGTTAATGAGTTTGAGCTATACGATGAGCGTTCCCATGCAGATAAAAGTGAGTTCGCTCAAATTGAACTTTG
GATACCGGTGA

Upstream 100 bases:

>100_bases
TATAAAAAAGTTACAATTTTTTATGGAATTATAGTAAAAAACGTCAAGAATTGGATAAGATTCTCTTTTATCATAATACA
TATAAGGCGGGTGAACAGAG

Downstream 100 bases:

>100_bases
AGAAGAAATAATAGATTGAGAGCGAGTCATTGAGAAATGGTTCGCTTTTTTATAAAGGGAGAGTGGGGATATGTTCCAAA
AACTAGAATGTGTATCTATA

Product: transcriptional regulator, AraC family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MESYETQIQRSIDYIEEDVMEKQTLRNLARIAGFSESHFHRVFQALVGDTVMEYVRKRRLARAAYQLSHTDEKIIDIAFE
HGFQSHETFTRAFKKLFQMTPSEYRKQEIETPMYYSVNVKQRKLNPYLGGIQMEYRIVNKPEFLMAGYELKTTSKEGKNH
QDIPAFWQEYLQKDLGTTIPNRKDTSQWVELGLCTDFNLETGDFTYIIGMEVTDFENVPNEIAKRTFPAATYAVFTRRKF
LMKKWYRLFTKHGMQYSQSGSRIQDTNIAALMSLSYTMSVPMQIKVSSLKLNFGYR

Sequences:

>Translated_296_residues
MESYETQIQRSIDYIEEDVMEKQTLRNLARIAGFSESHFHRVFQALVGDTVMEYVRKRRLARAAYQLSHTDEKIIDIAFE
HGFQSHETFTRAFKKLFQMTPSEYRKQEIETPMYYSVNVKQRKLNPYLGGIQMEYRIVNKPEFLMAGYELKTTSKEGKNH
QDIPAFWQEYLQKDLGTTIPNRKDTSQWVELGLCTDFNLETGDFTYIIGMEVTDFENVPNEIAKRTFPAATYAVFTRRKF
LMKKWYRLFTKHGMQYSQSGSRIQDTNIAALMSLSYTMSVPMQIKVSSLKLNFGYR
>Mature_296_residues
MESYETQIQRSIDYIEEDVMEKQTLRNLARIAGFSESHFHRVFQALVGDTVMEYVRKRRLARAAYQLSHTDEKIIDIAFE
HGFQSHETFTRAFKKLFQMTPSEYRKQEIETPMYYSVNVKQRKLNPYLGGIQMEYRIVNKPEFLMAGYELKTTSKEGKNH
QDIPAFWQEYLQKDLGTTIPNRKDTSQWVELGLCTDFNLETGDFTYIIGMEVTDFENVPNEIAKRTFPAATYAVFTRRKF
LMKKWYRLFTKHGMQYSQSGSRIQDTNIAALMSLSYTMSVPMQIKVSSLKLNFGYR

Specific function: Binds To The Right Arm Of The Replication Origin Oric Of The E.Coli Chromosome. Rob Binding May Influence The Formation Of The Nucleoprotein Structure, Required For Oric Function In The Initiation Of Replication. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790857, Length=93, Percent_Identity=40.8602150537634, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1790497, Length=103, Percent_Identity=35.9223300970874, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI87081928, Length=98, Percent_Identity=31.6326530612245, Blast_Score=71, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010499
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR011256 [H]

Pfam domain/function: PF06445 AraC_E_bind; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 34844; Mature: 34844

Theoretical pI: Translated: 9.35; Mature: 9.35

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESYETQIQRSIDYIEEDVMEKQTLRNLARIAGFSESHFHRVFQALVGDTVMEYVRKRRL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
ARAAYQLSHTDEKIIDIAFEHGFQSHETFTRAFKKLFQMTPSEYRKQEIETPMYYSVNVK
HHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCEEEEECH
QRKLNPYLGGIQMEYRIVNKPEFLMAGYELKTTSKEGKNHQDIPAFWQEYLQKDLGTTIP
HHHCCCCCCCEEEEEEEECCCCEEEECCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCC
NRKDTSQWVELGLCTDFNLETGDFTYIIGMEVTDFENVPNEIAKRTFPAATYAVFTRRKF
CCCCHHHHHHHHCCCCCCCCCCCEEEEEEEEECCHHCCHHHHHHHCCCHHHHHHHHHHHH
LMKKWYRLFTKHGMQYSQSGSRIQDTNIAALMSLSYTMSVPMQIKVSSLKLNFGYR
HHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEEEECCCC
>Mature Secondary Structure
MESYETQIQRSIDYIEEDVMEKQTLRNLARIAGFSESHFHRVFQALVGDTVMEYVRKRRL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
ARAAYQLSHTDEKIIDIAFEHGFQSHETFTRAFKKLFQMTPSEYRKQEIETPMYYSVNVK
HHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCEEEEECH
QRKLNPYLGGIQMEYRIVNKPEFLMAGYELKTTSKEGKNHQDIPAFWQEYLQKDLGTTIP
HHHCCCCCCCEEEEEEEECCCCEEEECCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCC
NRKDTSQWVELGLCTDFNLETGDFTYIIGMEVTDFENVPNEIAKRTFPAATYAVFTRRKF
CCCCHHHHHHHHCCCCCCCCCCCEEEEEEEEECCHHCCHHHHHHHCCCHHHHHHHHHHHH
LMKKWYRLFTKHGMQYSQSGSRIQDTNIAALMSLSYTMSVPMQIKVSSLKLNFGYR
HHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]