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The map label for this gene is yrdC [H]

Identifier: 227815788

GI number: 227815788

Start: 2923111

End: 2923665

Strand: Reverse

Name: yrdC [H]

Synonym: BAMEG_3211

Alternate gene names: 227815788

Gene position: 2923665-2923111 (Counterclockwise)

Preceding gene: 227815789

Following gene: 227815787

Centisome position: 55.9

GC content: 33.69

Gene sequence:

>555_bases
ATGAATAATCAAATAGCACTTATTCTAATTGATGTACAAAAGGCGTTTCAATTACCATACTGGGGTGAGAGAAATAATCT
TTTTGCTGAAGAAAATATGAGAATTTTGTTAGCAGAATGGAGAAAAAGGAAACGACCAGTTTTTCATATTCAACATGTAA
ATAAAGAAAATGATCAGTCAATGTTTTATGAGGGAGCAGAAACGGTTAACTTTAAAGAAGAAGTGAAACCATTGTCAGGT
GAAGTGGTTATTCAGAAAACCGTTAACAGCGCGTTCATTGGAACAAATTTAGAAGAGCAATTAAGAGAAAACAAATGTAA
TGCAGTAGTGATTGTAGGATTAACGACAAATCACTGTGTGGAGACTACGACACGAATGGCAGGTAATTTAGGATTTACAA
CGTATTTAGTGCGTGATGCGACGGCTACTTTTAATCGTAAAGGTCTAGATGGTAAAGAGTATAGTGCAGAAGATATTCAC
AATATGACACTTGTAAATTTACATGAAGAGTTTGCTACGATTGTGACGACAAAAGAAGCATTAAAATTATTTTAA

Upstream 100 bases:

>100_bases
GAAAAAGAAATTGTAGAGCTTTGCGCTTATATTTGTTTTATTACTGCGTCACAACAACTTGGTTTTCTATTTCAATTGCA
GCCGAATGAAGGAGGAAAGG

Downstream 100 bases:

>100_bases
GAAAATAATTGCGAATTATGTAGAAAAAAATAAGAATATTTCGTATAATTTAAGTACAATCATTTTGAAAATAGGGGTGG
CATCATATGGAGCAAATTCC

Product: isochorismatase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 184; Mature: 184

Protein sequence:

>184_residues
MNNQIALILIDVQKAFQLPYWGERNNLFAEENMRILLAEWRKRKRPVFHIQHVNKENDQSMFYEGAETVNFKEEVKPLSG
EVVIQKTVNSAFIGTNLEEQLRENKCNAVVIVGLTTNHCVETTTRMAGNLGFTTYLVRDATATFNRKGLDGKEYSAEDIH
NMTLVNLHEEFATIVTTKEALKLF

Sequences:

>Translated_184_residues
MNNQIALILIDVQKAFQLPYWGERNNLFAEENMRILLAEWRKRKRPVFHIQHVNKENDQSMFYEGAETVNFKEEVKPLSG
EVVIQKTVNSAFIGTNLEEQLRENKCNAVVIVGLTTNHCVETTTRMAGNLGFTTYLVRDATATFNRKGLDGKEYSAEDIH
NMTLVNLHEEFATIVTTKEALKLF
>Mature_184_residues
MNNQIALILIDVQKAFQLPYWGERNNLFAEENMRILLAEWRKRKRPVFHIQHVNKENDQSMFYEGAETVNFKEEVKPLSG
EVVIQKTVNSAFIGTNLEEQLRENKCNAVVIVGLTTNHCVETTTRMAGNLGFTTYLVRDATATFNRKGLDGKEYSAEDIH
NMTLVNLHEEFATIVTTKEALKLF

Specific function: Unknown

COG id: COG1335

COG function: function code Q; Amidases related to nicotinamidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the isochorismatase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000868 [H]

Pfam domain/function: PF00857 Isochorismatase [H]

EC number: NA

Molecular weight: Translated: 21109; Mature: 21109

Theoretical pI: Translated: 6.36; Mature: 6.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNQIALILIDVQKAFQLPYWGERNNLFAEENMRILLAEWRKRKRPVFHIQHVNKENDQS
CCCCEEEEEEEEHHHHCCCCCCCCCCEECCCCCEEEEEHHHHHCCCEEEEEECCCCCCCC
MFYEGAETVNFKEEVKPLSGEVVIQKTVNSAFIGTNLEEQLRENKCNAVVIVGLTTNHCV
EEECCCCCCCHHHHCCCCCCCEEEEEECCCEEECCCHHHHHHCCCCCEEEEEEECCCCHH
ETTTRMAGNLGFTTYLVRDATATFNRKGLDGKEYSAEDIHNMTLVNLHEEFATIVTTKEA
HHHHHHHCCCCEEEEEEECCHHHCCCCCCCCCCCCHHHHCCEEEEEHHHHHHHHHCCHHH
LKLF
HHCC
>Mature Secondary Structure
MNNQIALILIDVQKAFQLPYWGERNNLFAEENMRILLAEWRKRKRPVFHIQHVNKENDQS
CCCCEEEEEEEEHHHHCCCCCCCCCCEECCCCCEEEEEHHHHHCCCEEEEEECCCCCCCC
MFYEGAETVNFKEEVKPLSGEVVIQKTVNSAFIGTNLEEQLRENKCNAVVIVGLTTNHCV
EEECCCCCCCHHHHCCCCCCCEEEEEECCCEEECCCHHHHHHCCCCCEEEEEEECCCCHH
ETTTRMAGNLGFTTYLVRDATATFNRKGLDGKEYSAEDIHNMTLVNLHEEFATIVTTKEA
HHHHHHHCCCCEEEEEEECCHHHCCCCCCCCCCCCHHHHCCEEEEEHHHHHHHHHCCHHH
LKLF
HHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9308178; 9384377; 9287000 [H]