Click here to switch to the map view.

The map label for this gene is ddpC [H]

Identifier: 227814793

GI number: 227814793

Start: 2004268

End: 2005275

Strand: Reverse

Name: ddpC [H]

Synonym: BAMEG_2203

Alternate gene names: 227814793

Gene position: 2005275-2004268 (Counterclockwise)

Preceding gene: 227814794

Following gene: 227814791

Centisome position: 38.34

GC content: 36.11

Gene sequence:

>1008_bases
ATGTGGGAAGTTGTAAAAAGAGATGTAAGATTTTGGATTGGTGTTACTTTTTTAAGTGTACTTATGATTGTTAGTATTGG
GAATACGTTGTTTTTCGACGGGAATATTCGCGAACTAACGATGATGTATAACGAAAAAGGAGAACTAGAGGCTGCTCCGT
TTTCACCGTCGAGTAAATTTTGGTTCGGAAGTGATGAGAAAGGACGCGACCTTTTCCAGTTAATAATAGAAGGAGCAAAA
TGGACAGTTGGCGCGAGTGTAATTATAGCGATTTTACGAGTTATAGTTGGAGGGGGGATAGGCTTGCTTCTTGGTATGTA
TAGCAAACGGTCTTTTCCAGTTATATCATCTTTTTTTGATCCGTTCAGTATTGTACCTATGGTTATGGTTTCTTTCTTTG
TATTAAAGGAAGTTTTAGTTTTTGAAAATGGGACAGTACCAGAACCGTTTCATTTAAGGGTAATATTTCAAATGGTTATC
CTTATATGTTTAGCGGTACCAACAATTATGTTATATACAACGCAGGAAGTCCGTCGGATAAAAAGAGAAGAATTTATGAT
GGCAGCAACTGTGCTTGGGAGAAGTAATTGGCATAGAATGAAAAATCACGTATGGCCACACGTATTGCCATCATTTTTTT
TACTTGTCGCCCAACAATTTGTGAGCACTTTATTACTTCTTTTACATCTTGGCTTGTTGGAGTTATTTTTTGGTGGAACA
ATAATTTCTGGTTTAGAGGCAGATAGTGTAACGAAAGAATGGACTGGTCTAATTGGTCAAAACTTCCGCCACTTAACTAC
ACATACATGGATTGTACTTATACCGATTGCATTTTATAGTATGACAATTCTCGCAGGAAATCTAGTTAGTAATAGCATGC
AAGATGCGATTAAACTAGGGAATATAAGAACACCTAAGAGCAAGAACAAGGATAAAGAAATGAAGGAAGAGATACAAGTA
CAACATACTGTGAATGATTTTTCTTTCTATAGAGAGGTACAAAAATAA

Upstream 100 bases:

>100_bases
ATATTTACAGTGAGCTTAATTATGTTATACGTACCGCTTTTTATACTATTTCGTTTATTACATACGTTCTTACAAAATGT
TATAAAGGAGCGTGTGTAAC

Downstream 100 bases:

>100_bases
AAAAAGATAGCTGAAGACAAATTGTTTTCAGCTATCTTTTTTTGTTTAATTTAGTGATGTCCAGCTAGTAGAGTAAACAC
TATTATTAAGAAAAATCCAC

Product: oligopeptide ABC transporter, permease component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 335; Mature: 335

Protein sequence:

>335_residues
MWEVVKRDVRFWIGVTFLSVLMIVSIGNTLFFDGNIRELTMMYNEKGELEAAPFSPSSKFWFGSDEKGRDLFQLIIEGAK
WTVGASVIIAILRVIVGGGIGLLLGMYSKRSFPVISSFFDPFSIVPMVMVSFFVLKEVLVFENGTVPEPFHLRVIFQMVI
LICLAVPTIMLYTTQEVRRIKREEFMMAATVLGRSNWHRMKNHVWPHVLPSFFLLVAQQFVSTLLLLLHLGLLELFFGGT
IISGLEADSVTKEWTGLIGQNFRHLTTHTWIVLIPIAFYSMTILAGNLVSNSMQDAIKLGNIRTPKSKNKDKEMKEEIQV
QHTVNDFSFYREVQK

Sequences:

>Translated_335_residues
MWEVVKRDVRFWIGVTFLSVLMIVSIGNTLFFDGNIRELTMMYNEKGELEAAPFSPSSKFWFGSDEKGRDLFQLIIEGAK
WTVGASVIIAILRVIVGGGIGLLLGMYSKRSFPVISSFFDPFSIVPMVMVSFFVLKEVLVFENGTVPEPFHLRVIFQMVI
LICLAVPTIMLYTTQEVRRIKREEFMMAATVLGRSNWHRMKNHVWPHVLPSFFLLVAQQFVSTLLLLLHLGLLELFFGGT
IISGLEADSVTKEWTGLIGQNFRHLTTHTWIVLIPIAFYSMTILAGNLVSNSMQDAIKLGNIRTPKSKNKDKEMKEEIQV
QHTVNDFSFYREVQK
>Mature_335_residues
MWEVVKRDVRFWIGVTFLSVLMIVSIGNTLFFDGNIRELTMMYNEKGELEAAPFSPSSKFWFGSDEKGRDLFQLIIEGAK
WTVGASVIIAILRVIVGGGIGLLLGMYSKRSFPVISSFFDPFSIVPMVMVSFFVLKEVLVFENGTVPEPFHLRVIFQMVI
LICLAVPTIMLYTTQEVRRIKREEFMMAATVLGRSNWHRMKNHVWPHVLPSFFLLVAQQFVSTLLLLLHLGLLELFFGGT
IISGLEADSVTKEWTGLIGQNFRHLTTHTWIVLIPIAFYSMTILAGNLVSNSMQDAIKLGNIRTPKSKNKDKEMKEEIQV
QHTVNDFSFYREVQK

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787760, Length=265, Percent_Identity=21.8867924528302, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1787054, Length=245, Percent_Identity=22.0408163265306, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 38209; Mature: 38209

Theoretical pI: Translated: 9.33; Mature: 9.33

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWEVVKRDVRFWIGVTFLSVLMIVSIGNTLFFDGNIRELTMMYNEKGELEAAPFSPSSKF
CHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHEEECCCCCCEECCCCCCCCC
WFGSDEKGRDLFQLIIEGAKWTVGASVIIAILRVIVGGGIGLLLGMYSKRSFPVISSFFD
CCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHCC
PFSIVPMVMVSFFVLKEVLVFENGTVPEPFHLRVIFQMVILICLAVPTIMLYTTQEVRRI
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KREEFMMAATVLGRSNWHRMKNHVWPHVLPSFFLLVAQQFVSTLLLLLHLGLLELFFGGT
HHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
IISGLEADSVTKEWTGLIGQNFRHLTTHTWIVLIPIAFYSMTILAGNLVSNSMQDAIKLG
HHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NIRTPKSKNKDKEMKEEIQVQHTVNDFSFYREVQK
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MWEVVKRDVRFWIGVTFLSVLMIVSIGNTLFFDGNIRELTMMYNEKGELEAAPFSPSSKF
CHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHEEECCCCCCEECCCCCCCCC
WFGSDEKGRDLFQLIIEGAKWTVGASVIIAILRVIVGGGIGLLLGMYSKRSFPVISSFFD
CCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHCC
PFSIVPMVMVSFFVLKEVLVFENGTVPEPFHLRVIFQMVILICLAVPTIMLYTTQEVRRI
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KREEFMMAATVLGRSNWHRMKNHVWPHVLPSFFLLVAQQFVSTLLLLLHLGLLELFFGGT
HHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
IISGLEADSVTKEWTGLIGQNFRHLTTHTWIVLIPIAFYSMTILAGNLVSNSMQDAIKLG
HHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NIRTPKSKNKDKEMKEEIQVQHTVNDFSFYREVQK
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]