Click here to switch to the map view.

The map label for this gene is ydfL [H]

Identifier: 227814611

GI number: 227814611

Start: 1838400

End: 1839209

Strand: Reverse

Name: ydfL [H]

Synonym: BAMEG_2021

Alternate gene names: 227814611

Gene position: 1839209-1838400 (Counterclockwise)

Preceding gene: 227814612

Following gene: 227814609

Centisome position: 35.17

GC content: 31.98

Gene sequence:

>810_bases
ATGTTTAAAATAGGAGACTTTTCAAAACTATCTTCCATTAGTATTCGGATGTTGAGACACTACGACAAAGTGGAATTATT
ACAACCAGTAAAAGTCGATGAGCTGAGTGGATATCGATTTTATTCAGCAGACCAATTAAAAAAAGTAAATCAAATTCAAA
TATTAAAAGCGATGGGGTTTAATATTAATACCATTAAAGAAATAATAGAATGCGATAATATAGATAGCATAAAAGAGCAA
TTTTTAAATCGTAGTGTTCAAATTAAAGAAGACATGTATAACCTCCAAAAACAATTACGTCTCCTCGAAGACTCAATGAA
AACGATGAGAGAGGATGTTGTTGAGATGAATTATCATGTTTCAATAAAAGAAATTCCAGAAAGAACTGTAGCTAGTGTTA
GAAAGATTATTCCATCGTATAATTGCGAAGGTGATTTATGGAGTATATTAATGCAAGAAATTCAAATGGAGAATATTAGT
ATTGACCATCCGAGTTATAGTATCGCTGTCTTCCATGATCAAGAATACAAAGAAAATGATGTAGATGTAGAAATACAGCT
AAATATCTTAGGAAAGCATGAAAATACAAAAGATGTTTATTTTCAAAAAATAGAGCCAATCAAAGTAGCTTCTGTAACAG
TAAGTGGAAGTTATGAACAAATGACAAACGTAAATGAAGCAGCCGCAAAATGGATTGAGACAGAAGGTTACGAATTAGCA
GGCCCGATGTTTAACATTTATCATGTGAGTCCAGCAATGGAATCGGATCCTAATAAGTGGGTTACAGAAGTTTGTTATCC
AGTTAAATGA

Upstream 100 bases:

>100_bases
GAAATATAAGTTAAGTGTTAGAAACAGTTGACTCTCACACAATGTCATTGTTTAAGATGAAGTTGAACTTCGAAGTAGAT
GTAATTTATAGGAGGAAATC

Downstream 100 bases:

>100_bases
TGATAAAGAAAAAAGGCATTATAATATGCCTTTTTCTTTATAAACTTATCCATAAATTTTAATTAACCAATCATACATAA
TTATCTTTCCTTCTATCATA

Product: transcriptional regulator, MerR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 269; Mature: 269

Protein sequence:

>269_residues
MFKIGDFSKLSSISIRMLRHYDKVELLQPVKVDELSGYRFYSADQLKKVNQIQILKAMGFNINTIKEIIECDNIDSIKEQ
FLNRSVQIKEDMYNLQKQLRLLEDSMKTMREDVVEMNYHVSIKEIPERTVASVRKIIPSYNCEGDLWSILMQEIQMENIS
IDHPSYSIAVFHDQEYKENDVDVEIQLNILGKHENTKDVYFQKIEPIKVASVTVSGSYEQMTNVNEAAAKWIETEGYELA
GPMFNIYHVSPAMESDPNKWVTEVCYPVK

Sequences:

>Translated_269_residues
MFKIGDFSKLSSISIRMLRHYDKVELLQPVKVDELSGYRFYSADQLKKVNQIQILKAMGFNINTIKEIIECDNIDSIKEQ
FLNRSVQIKEDMYNLQKQLRLLEDSMKTMREDVVEMNYHVSIKEIPERTVASVRKIIPSYNCEGDLWSILMQEIQMENIS
IDHPSYSIAVFHDQEYKENDVDVEIQLNILGKHENTKDVYFQKIEPIKVASVTVSGSYEQMTNVNEAAAKWIETEGYELA
GPMFNIYHVSPAMESDPNKWVTEVCYPVK
>Mature_269_residues
MFKIGDFSKLSSISIRMLRHYDKVELLQPVKVDELSGYRFYSADQLKKVNQIQILKAMGFNINTIKEIIECDNIDSIKEQ
FLNRSVQIKEDMYNLQKQLRLLEDSMKTMREDVVEMNYHVSIKEIPERTVASVRKIIPSYNCEGDLWSILMQEIQMENIS
IDHPSYSIAVFHDQEYKENDVDVEIQLNILGKHENTKDVYFQKIEPIKVASVTVSGSYEQMTNVNEAAAKWIETEGYELA
GPMFNIYHVSPAMESDPNKWVTEVCYPVK

Specific function: Zinc-Responsive Transcriptional Regulator Of Znta. [C]

COG id: COG0789

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH merR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010499
- InterPro:   IPR009061
- InterPro:   IPR000551
- InterPro:   IPR011256 [H]

Pfam domain/function: PF06445 AraC_E_bind; PF00376 MerR [H]

EC number: NA

Molecular weight: Translated: 31308; Mature: 31308

Theoretical pI: Translated: 4.80; Mature: 4.80

Prosite motif: PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKIGDFSKLSSISIRMLRHYDKVELLQPVKVDELSGYRFYSADQLKKVNQIQILKAMGF
CCCCCCCHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHCC
NINTIKEIIECDNIDSIKEQFLNRSVQIKEDMYNLQKQLRLLEDSMKTMREDVVEMNYHV
CHHHHHHHHHCCCCHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEE
SIKEIPERTVASVRKIIPSYNCEGDLWSILMQEIQMENISIDHPSYSIAVFHDQEYKEND
EHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCEECCCCEEEEEEECCCCCCCC
VDVEIQLNILGKHENTKDVYFQKIEPIKVASVTVSGSYEQMTNVNEAAAKWIETEGYELA
CCEEEEEEEEECCCCCHHHHHHCCCCEEEEEEEECCCHHHHHCHHHHHHHHHHCCCCEEC
GPMFNIYHVSPAMESDPNKWVTEVCYPVK
CCEEEEEEECCCCCCCCCHHHHHHCCCCC
>Mature Secondary Structure
MFKIGDFSKLSSISIRMLRHYDKVELLQPVKVDELSGYRFYSADQLKKVNQIQILKAMGF
CCCCCCCHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHCC
NINTIKEIIECDNIDSIKEQFLNRSVQIKEDMYNLQKQLRLLEDSMKTMREDVVEMNYHV
CHHHHHHHHHCCCCHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEE
SIKEIPERTVASVRKIIPSYNCEGDLWSILMQEIQMENISIDHPSYSIAVFHDQEYKEND
EHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCEECCCCEEEEEEECCCCCCCC
VDVEIQLNILGKHENTKDVYFQKIEPIKVASVTVSGSYEQMTNVNEAAAKWIETEGYELA
CCEEEEEEEEECCCCCHHHHHHCCCCEEEEEEEECCCHHHHHCHHHHHHHHHHCCCCEEC
GPMFNIYHVSPAMESDPNKWVTEVCYPVK
CCEEEEEEECCCCCCCCCHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]