Click here to switch to the map view.

The map label for this gene is yrbD [H]

Identifier: 227814358

GI number: 227814358

Start: 1612275

End: 1613765

Strand: Direct

Name: yrbD [H]

Synonym: BAMEG_1766

Alternate gene names: 227814358

Gene position: 1612275-1613765 (Clockwise)

Preceding gene: 227814357

Following gene: 227814359

Centisome position: 30.83

GC content: 37.29

Gene sequence:

>1491_bases
ATGGAGCAATTAGTAGAGTGGTTAGTAGGGCAAGTGTGGAGTATTGGTTTAGTTGTTTTCGCGTTAGGAGCAGGTGTGTA
TTTTACAATTGCAACTCGTTTTCTTCAAATTCGTTATTTTAAAGAGATGATTAAACTATTATTTGAAGGGAAGAGCTCAG
AAACGGGAATATCATCCTTTCAAGCATTTTGTTTAGCTTTATCAGGCAGGGTTGGAATAGGTAATATTGCAGGGGTCGCG
ACAGCTATCGCTTTTGGCGGGCCTGGAGCTGTATTTTGGATGTGGGTAATGGCTCTTTTAGGAGCAGCTAGTGCCTTTGT
CGAATCAACATTATCTCAAATATATAAAAGTAAAGTTGAAAATGAATATCGCGGTGGTACACCGTATTTCATTGAAAAAG
GCTTAAACATGAAATGGTTTGCAGTCATTGTAGCGGTCGTTGTAACACTTTCATATGGTGTTTTATTACCAGGTATTCAA
TCTAGTAGTATCGCAGTTGGATTCGAAAACTCTAATGGGATTAGCAAATATATAACTGGTATCTTGTTAGTTGTATTATT
AGCAGCAATTATTTTTGGTGGCGTAAAGAGAATTGCTGGCGTTTCTCAAATGCTCGTTCCATTTATGGCAATTGGTTATG
TAATTGTTACATGTATCGTATTAATTGCGAATGTAAAAGAAATCCCAAGTATGTTCGCTTTAATTTTCTCAAGTGCTTTT
GGTGTGAATGAAATGTTTGGTGGAATCGTCGGTGCAGCAATCGCGTGGGGCGTAAAGTGCGCTGTATTTTCTAACGTTGC
TGGCGTTGGAGAAGCGACGTATAGTTCGGCCGCGGCTGAAGTATCTCATCCAGCAAAACAAGGGTTAGTTCAAGCGTTTT
CTGTATACATTGATACAATTGTCGTATGTACAGCGACAGCTCTTATGATCTTAATAACAGGTATGTATAATGTTATACCT
GAAGGGAAAAGCGCTATCGTAAAGAATATAGGGAATGTTGATGCGGGTCCAATTTATACACAACAAGCAGTTGAAACTGT
TATGACAGGGTTTGGTCCATTATTCATTTCAATCGCAATTTTCTTCTTCGCATTTACAACATTACTTGCATACTACTATA
TCGCTGAAACGACACTTACTTATTTAGACCGTGAACTTAAGCATAGTTGGTTAAAACCAGTTTTGAAAATTGGATTTTTA
ATTATGGTTTACATCGGTAGTGTAGAATCAGCATCGCTTTTATGGAATCTTGGAGATTTAGGAATCGGTAGTATGGCATG
GTTAAACTTAATCGCGATTCTACTATTAAGTAAAATCGCATTAAAAGTGTTAAAAGATTATGAAACGCAGAAAAAAGAAG
GGAAAGATCCCGTGTTTGATCCTAAAAATGTGGGAATTGAAGGTTTAACATTTTGGGAAGAAAGAAGTAAAGAGGTTGCA
AGAAAAAACTCAAAAGAACAAGCGGTAGTGGATGATAGTCTGAAATTGTAG

Upstream 100 bases:

>100_bases
ATGAAATAATGAGATAGACGGACAACTGGAAGTTTTAATAATAGTTGTCCGTTTTCTTATATATAAAATAGTTTTCTAAA
GAATGATAAGGGGGATTTGG

Downstream 100 bases:

>100_bases
TTTTAATAAACAGAATATTCATTCTATTTAGTGGGGTATATTGCCTTCCTTTCATCACATACTACAATAGGTACAGATAA
TTTGAATGGAGGGAATAATA

Product: sodium/alanine symporter family protein

Products: Na (I) [Cytoplasm]; L-alanine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 496; Mature: 496

Protein sequence:

>496_residues
MEQLVEWLVGQVWSIGLVVFALGAGVYFTIATRFLQIRYFKEMIKLLFEGKSSETGISSFQAFCLALSGRVGIGNIAGVA
TAIAFGGPGAVFWMWVMALLGAASAFVESTLSQIYKSKVENEYRGGTPYFIEKGLNMKWFAVIVAVVVTLSYGVLLPGIQ
SSSIAVGFENSNGISKYITGILLVVLLAAIIFGGVKRIAGVSQMLVPFMAIGYVIVTCIVLIANVKEIPSMFALIFSSAF
GVNEMFGGIVGAAIAWGVKCAVFSNVAGVGEATYSSAAAEVSHPAKQGLVQAFSVYIDTIVVCTATALMILITGMYNVIP
EGKSAIVKNIGNVDAGPIYTQQAVETVMTGFGPLFISIAIFFFAFTTLLAYYYIAETTLTYLDRELKHSWLKPVLKIGFL
IMVYIGSVESASLLWNLGDLGIGSMAWLNLIAILLLSKIALKVLKDYETQKKEGKDPVFDPKNVGIEGLTFWEERSKEVA
RKNSKEQAVVDDSLKL

Sequences:

>Translated_496_residues
MEQLVEWLVGQVWSIGLVVFALGAGVYFTIATRFLQIRYFKEMIKLLFEGKSSETGISSFQAFCLALSGRVGIGNIAGVA
TAIAFGGPGAVFWMWVMALLGAASAFVESTLSQIYKSKVENEYRGGTPYFIEKGLNMKWFAVIVAVVVTLSYGVLLPGIQ
SSSIAVGFENSNGISKYITGILLVVLLAAIIFGGVKRIAGVSQMLVPFMAIGYVIVTCIVLIANVKEIPSMFALIFSSAF
GVNEMFGGIVGAAIAWGVKCAVFSNVAGVGEATYSSAAAEVSHPAKQGLVQAFSVYIDTIVVCTATALMILITGMYNVIP
EGKSAIVKNIGNVDAGPIYTQQAVETVMTGFGPLFISIAIFFFAFTTLLAYYYIAETTLTYLDRELKHSWLKPVLKIGFL
IMVYIGSVESASLLWNLGDLGIGSMAWLNLIAILLLSKIALKVLKDYETQKKEGKDPVFDPKNVGIEGLTFWEERSKEVA
RKNSKEQAVVDDSLKL
>Mature_496_residues
MEQLVEWLVGQVWSIGLVVFALGAGVYFTIATRFLQIRYFKEMIKLLFEGKSSETGISSFQAFCLALSGRVGIGNIAGVA
TAIAFGGPGAVFWMWVMALLGAASAFVESTLSQIYKSKVENEYRGGTPYFIEKGLNMKWFAVIVAVVVTLSYGVLLPGIQ
SSSIAVGFENSNGISKYITGILLVVLLAAIIFGGVKRIAGVSQMLVPFMAIGYVIVTCIVLIANVKEIPSMFALIFSSAF
GVNEMFGGIVGAAIAWGVKCAVFSNVAGVGEATYSSAAAEVSHPAKQGLVQAFSVYIDTIVVCTATALMILITGMYNVIP
EGKSAIVKNIGNVDAGPIYTQQAVETVMTGFGPLFISIAIFFFAFTTLLAYYYIAETTLTYLDRELKHSWLKPVLKIGFL
IMVYIGSVESASLLWNLGDLGIGSMAWLNLIAILLLSKIALKVLKDYETQKKEGKDPVFDPKNVGIEGLTFWEERSKEVA
RKNSKEQAVVDDSLKL

Specific function: Unknown

COG id: COG1115

COG function: function code E; Na+/alanine symporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:alanine (SAF) symporter family [H]

Homologues:

Organism=Escherichia coli, GI1786188, Length=482, Percent_Identity=36.5145228215768, Blast_Score=277, Evalue=9e-76,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001463 [H]

Pfam domain/function: PF01235 Na_Ala_symp [H]

EC number: NA

Molecular weight: Translated: 53502; Mature: 53502

Theoretical pI: Translated: 7.88; Mature: 7.88

Prosite motif: PS00873 NA_ALANINE_SYMP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HCCCCCHHHHCCCCCC
>Mature Secondary Structure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HCCCCCHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Na (I) [Periplasm]; L-alanine [Periplasm] [C]

Specific reaction: Na (I) [Periplasm] + L-alanine [Periplasm] = Na (I) [Cytoplasm] + L-alanine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]