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The map label for this gene is pepF [H]

Identifier: 227814321

GI number: 227814321

Start: 1578166

End: 1579350

Strand: Direct

Name: pepF [H]

Synonym: BAMEG_1729

Alternate gene names: 227814321

Gene position: 1578166-1579350 (Clockwise)

Preceding gene: 227814320

Following gene: 227814322

Centisome position: 30.17

GC content: 31.22

Gene sequence:

>1185_bases
ATGAATAGTGATAATGAAAAGGAAAGAGTAAAAGTATTCGAGTCATTAACATGTGCTTTACATAAGGAGAAAGAAATTTT
TGCTACTGTATTAAATCAAATAGGAAGATTGCGTAATACAAAGGGCAATGAATTAGAAGATAGAGAGATTTTAGCAAGCT
CCCTTCATGCGAATGGTATTTCAGAAACTGTATTATTACAAATATGGAATGCGACAGAAGAAAACCTAGATAAATTAGTA
AGTGCTTTAAACGTGTATAAAAAAGGAAAAATCTCGATAACATGGCATGAAATTATGACAGTAAAGGAAAATAATGAGGC
TATTATTCCTTTTTCAGTAGCAGTACAAAACATATACGGTGCATTTAAAAATATAGATGAAGAATTAGCAGAATTAGCAC
GTAATGCGATAGAAAGTGGTTGGGTAGATGCAGAACCGAGAGAGAATAAACCCCCAGGTGGATTTTGTGCTCCTTTTTTC
AGTGAAAAAGAATCTCGAATCTCTATGCGTTATGACGGAAGTATCGATAGTGTAAGAATACTTGCCCACGAACTAGGACA
TGCTTGGCATTTTTATAATATGAGTTTTGAGCAATCCTCTTCTTTTTTAGATGATTATTTGCCAATGAGTACAGCTGAAT
CAGCGTCTATTTTCTTTGAAACGCTGCTTATAAATTATCTAATTCAAACAACAGATAGTATAGATATAAAAAAGTCATTG
CTTAGCTGGAAAATAAGAAACTGTTTTAATTATGTAATGGCAATTCGAGCATCGTTCGAATTTGAGAAGAACTTTTATGA
AAAATGTAAAGAAAGTCCTATAAGTGCTGATGAAATCGAGAAAATATCTATAGTAGCGCAAGAAAAAGCATATGGGAATG
CATTATCAGAATATCAGCCATTTGTTTGGATGAAATATGTCCAGTTTTATATAGCAGATGTTCCTTTTTATAATTATCCA
TACACATTTGGATATTTAGTTAGTTTTAGTTTATTAGAAATAGCTAAAGAAAATAAAAGTACGTTTCATTCGAAGTTTAA
AGAGTTTTTAAGAGAAAATGGAAAGGCTCCAGTGGAAGAGCTTATAAAAAAACATTTTGAAATAGATATAACAAGCTATG
CATTCTGGGATAAAGCTTTTAAACAAATTTCTAAAGATATTGATGCATATTTGAGGCTTATATAA

Upstream 100 bases:

>100_bases
GATGAACTTCATGCGTGGGAAAATATGTACATACAATTAAGGGATAGAAATAGAACACAATAATAAGCAATTATCATTTG
GACAAGCAAATCATGTTGCA

Downstream 100 bases:

>100_bases
GGGGAGAGTATAGTGGATCACCAACTTATAAAGGGAATACCTTTTGCAACTTTAGAATATGCAAAAGCTATAAGTTTATT
AAAAGGTTGGCTACATGAAA

Product: peptidase, family M3

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 394; Mature: 394

Protein sequence:

>394_residues
MNSDNEKERVKVFESLTCALHKEKEIFATVLNQIGRLRNTKGNELEDREILASSLHANGISETVLLQIWNATEENLDKLV
SALNVYKKGKISITWHEIMTVKENNEAIIPFSVAVQNIYGAFKNIDEELAELARNAIESGWVDAEPRENKPPGGFCAPFF
SEKESRISMRYDGSIDSVRILAHELGHAWHFYNMSFEQSSSFLDDYLPMSTAESASIFFETLLINYLIQTTDSIDIKKSL
LSWKIRNCFNYVMAIRASFEFEKNFYEKCKESPISADEIEKISIVAQEKAYGNALSEYQPFVWMKYVQFYIADVPFYNYP
YTFGYLVSFSLLEIAKENKSTFHSKFKEFLRENGKAPVEELIKKHFEIDITSYAFWDKAFKQISKDIDAYLRLI

Sequences:

>Translated_394_residues
MNSDNEKERVKVFESLTCALHKEKEIFATVLNQIGRLRNTKGNELEDREILASSLHANGISETVLLQIWNATEENLDKLV
SALNVYKKGKISITWHEIMTVKENNEAIIPFSVAVQNIYGAFKNIDEELAELARNAIESGWVDAEPRENKPPGGFCAPFF
SEKESRISMRYDGSIDSVRILAHELGHAWHFYNMSFEQSSSFLDDYLPMSTAESASIFFETLLINYLIQTTDSIDIKKSL
LSWKIRNCFNYVMAIRASFEFEKNFYEKCKESPISADEIEKISIVAQEKAYGNALSEYQPFVWMKYVQFYIADVPFYNYP
YTFGYLVSFSLLEIAKENKSTFHSKFKEFLRENGKAPVEELIKKHFEIDITSYAFWDKAFKQISKDIDAYLRLI
>Mature_394_residues
MNSDNEKERVKVFESLTCALHKEKEIFATVLNQIGRLRNTKGNELEDREILASSLHANGISETVLLQIWNATEENLDKLV
SALNVYKKGKISITWHEIMTVKENNEAIIPFSVAVQNIYGAFKNIDEELAELARNAIESGWVDAEPRENKPPGGFCAPFF
SEKESRISMRYDGSIDSVRILAHELGHAWHFYNMSFEQSSSFLDDYLPMSTAESASIFFETLLINYLIQTTDSIDIKKSL
LSWKIRNCFNYVMAIRASFEFEKNFYEKCKESPISADEIEKISIVAQEKAYGNALSEYQPFVWMKYVQFYIADVPFYNYP
YTFGYLVSFSLLEIAKENKSTFHSKFKEFLRENGKAPVEELIKKHFEIDITSYAFWDKAFKQISKDIDAYLRLI

Specific function: Unknown

COG id: COG1164

COG function: function code E; Oligoendopeptidase F

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M3B family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001567
- InterPro:   IPR004438
- InterPro:   IPR013647 [H]

Pfam domain/function: PF01432 Peptidase_M3; PF08439 Peptidase_M3_N [H]

EC number: NA

Molecular weight: Translated: 45593; Mature: 45593

Theoretical pI: Translated: 5.05; Mature: 5.05

Prosite motif: PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSDNEKERVKVFESLTCALHKEKEIFATVLNQIGRLRNTKGNELEDREILASSLHANGI
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCC
SETVLLQIWNATEENLDKLVSALNVYKKGKISITWHEIMTVKENNEAIIPFSVAVQNIYG
CHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEHHHEEEEECCCCEEEHHHHHHHHHHH
AFKNIDEELAELARNAIESGWVDAEPRENKPPGGFCAPFFSEKESRISMRYDGSIDSVRI
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCHHCCCCCCEEEEECCCCHHHHH
LAHELGHAWHFYNMSFEQSSSFLDDYLPMSTAESASIFFETLLINYLIQTTDSIDIKKSL
HHHHHCCEEEEECCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHH
LSWKIRNCFNYVMAIRASFEFEKNFYEKCKESPISADEIEKISIVAQEKAYGNALSEYQP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHCCH
FVWMKYVQFYIADVPFYNYPYTFGYLVSFSLLEIAKENKSTFHSKFKEFLRENGKAPVEE
HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
LIKKHFEIDITSYAFWDKAFKQISKDIDAYLRLI
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNSDNEKERVKVFESLTCALHKEKEIFATVLNQIGRLRNTKGNELEDREILASSLHANGI
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCC
SETVLLQIWNATEENLDKLVSALNVYKKGKISITWHEIMTVKENNEAIIPFSVAVQNIYG
CHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEHHHEEEEECCCCEEEHHHHHHHHHHH
AFKNIDEELAELARNAIESGWVDAEPRENKPPGGFCAPFFSEKESRISMRYDGSIDSVRI
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCHHCCCCCCEEEEECCCCHHHHH
LAHELGHAWHFYNMSFEQSSSFLDDYLPMSTAESASIFFETLLINYLIQTTDSIDIKKSL
HHHHHCCEEEEECCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHH
LSWKIRNCFNYVMAIRASFEFEKNFYEKCKESPISADEIEKISIVAQEKAYGNALSEYQP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHCCH
FVWMKYVQFYIADVPFYNYPYTFGYLVSFSLLEIAKENKSTFHSKFKEFLRENGKAPVEE
HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
LIKKHFEIDITSYAFWDKAFKQISKDIDAYLRLI
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11353084 [H]