Click here to switch to the map view.

The map label for this gene is rocB [H]

Identifier: 227814201

GI number: 227814201

Start: 1474333

End: 1475973

Strand: Direct

Name: rocB [H]

Synonym: BAMEG_1609

Alternate gene names: 227814201

Gene position: 1474333-1475973 (Clockwise)

Preceding gene: 227814200

Following gene: 227814203

Centisome position: 28.19

GC content: 35.22

Gene sequence:

>1641_bases
ATGTCAAAGTGGCAATCAAAAGAACAATTGATTCAATTAGTAAGCGGTCTTGTTGAAATTCCTAGTATTACAGGTACAGA
AGCTGAAGTGATATTGCCAGACTTCGTTGTGGAACAATTATCTGATTTACAGTACTTCAAAGAAAACCCGCATCATTTGC
AAAAAAATCCGACGGGGGACGGAAGGTATTTTGTTACAGCACTAGTAAAGAAAAGTGATAGTACAAAAAACACCGTAATT
CTAGTTAGTCACTTTGATGTTGTAGATGTGCAAGATTACGGAGTGTGGAAAGAAGATGCATTTAATCCTAAAAAGTTAAC
ATCTATGTTTTATTCTCATAAAGATGAATTACCAGCCCATGTACGTGAAGATATAGAACAAGGAGATTGGCTGTTTGGTA
GAGGAACAATGGACATGAAATGCGGCCTTGCGTTACAAATGGCGATGATTGAGCAAGCTTGCGAAGGAAGATTTGATGGG
AATGTTCTTTTACTAGCTGTTCCAGATGAAGAAGTAAATTCTGTCGGGATGAGAGCTGCTGTCCCAAGATTATTAGATTT
AGCAAGAGAACATGATTTAGATTATAAAACAGTACTAAATTCAGAGCCTATGTTTTCAAGGCATCCTGGTGATCAAAAGA
AATATATTTACACTGGTTCTATTGGTAAAGTGTTACCTGGTTTTCTTTGCTACGGAAAAGAGACACATGTAGGTGAACCT
TTTGCAGGTTTAAATGGGAGTTATATGGCTTCATTAATAACAGCAGAATTAGAGTTGAATACAGACCTTTGTGATATTGT
AGAAGGGGAAGCGAGTCCTCCGCCAACTAACTTACTTCAACGGGACTTAAAGGAGGATTATTCTGTACAAATTCCGCATC
GTGCAGTCACATTATTTAATTTGTTTTTACTAGAAAAATCAATGACAGATGTCGTTTCATTGCTGCGTCAAAAAGTAACG
AAAGTAGCAGAAAAAATAGAAGAATCATATGAGAAGCAAGCTTATCGTTTTTCTAAATATAATCCATTTATACCACCTAA
CCTCAAAGTAAATGTATTAACATATGAAGAGCTTATCGCTTATGCAATTGAACAACATGGGCAAGAGAAAATAGATGATA
TTCAATCTAGCATTATTAAAAATAGAGAAGATAAAGATGATCGTGCGGTAACGATTGATTTAGTAGATAAATTAGCTATT
TTATGTAAAGAAAAGGCGCCGATGATTGTACTTTTCTTCGCTCCGCCATATTATCCAGCTGTAAGTTCACGTAACAACAA
GTTAATTAAAGAAGTAGTCGGAGAAATGGAAAGGTATGCACACTTCAATCATAATATTACATTTGAAAACCAAAACTATT
TTGGAGGAATTTCAGATTTGAGCTATGTGGGCTTACAAAATCCATTACATTCAATGAGTTCACTTGTAGACAATATGCCA
TTATGGGATAAAGGTTACTCAATTCCACTTCAGGAACTAGAAGAATTTGACGTTCCAGTATTAAATATGGGGCCGGTAGG
AAAAGATGCTCATCAATGGACAGAACGTCTAGATGTAAATTACGCATTTGAAACGCTATTAGATATGTTACCGATTTGCA
TTGAAAAATTACTTGTTTCTAATAAAATTACACAAGTATAG

Upstream 100 bases:

>100_bases
AATCGGCAGTACATCAGAACTATAGTTTTGATAGCTGTCGTCATTTTTTATTCATATACTGGAATTCATTTTCATAATAC
GGAAAAATAGGGGGATTTAT

Downstream 100 bases:

>100_bases
TAGGGAAGGAATAAGTGGAATTATTTTAATATAATTAAAATGAAAAAGGCTAAACTCAAGTATATTCGAGTTTAGCCTTT
TATCCTGTAGTGCGTTTCTA

Product: RocB protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 546; Mature: 545

Protein sequence:

>546_residues
MSKWQSKEQLIQLVSGLVEIPSITGTEAEVILPDFVVEQLSDLQYFKENPHHLQKNPTGDGRYFVTALVKKSDSTKNTVI
LVSHFDVVDVQDYGVWKEDAFNPKKLTSMFYSHKDELPAHVREDIEQGDWLFGRGTMDMKCGLALQMAMIEQACEGRFDG
NVLLLAVPDEEVNSVGMRAAVPRLLDLAREHDLDYKTVLNSEPMFSRHPGDQKKYIYTGSIGKVLPGFLCYGKETHVGEP
FAGLNGSYMASLITAELELNTDLCDIVEGEASPPPTNLLQRDLKEDYSVQIPHRAVTLFNLFLLEKSMTDVVSLLRQKVT
KVAEKIEESYEKQAYRFSKYNPFIPPNLKVNVLTYEELIAYAIEQHGQEKIDDIQSSIIKNREDKDDRAVTIDLVDKLAI
LCKEKAPMIVLFFAPPYYPAVSSRNNKLIKEVVGEMERYAHFNHNITFENQNYFGGISDLSYVGLQNPLHSMSSLVDNMP
LWDKGYSIPLQELEEFDVPVLNMGPVGKDAHQWTERLDVNYAFETLLDMLPICIEKLLVSNKITQV

Sequences:

>Translated_546_residues
MSKWQSKEQLIQLVSGLVEIPSITGTEAEVILPDFVVEQLSDLQYFKENPHHLQKNPTGDGRYFVTALVKKSDSTKNTVI
LVSHFDVVDVQDYGVWKEDAFNPKKLTSMFYSHKDELPAHVREDIEQGDWLFGRGTMDMKCGLALQMAMIEQACEGRFDG
NVLLLAVPDEEVNSVGMRAAVPRLLDLAREHDLDYKTVLNSEPMFSRHPGDQKKYIYTGSIGKVLPGFLCYGKETHVGEP
FAGLNGSYMASLITAELELNTDLCDIVEGEASPPPTNLLQRDLKEDYSVQIPHRAVTLFNLFLLEKSMTDVVSLLRQKVT
KVAEKIEESYEKQAYRFSKYNPFIPPNLKVNVLTYEELIAYAIEQHGQEKIDDIQSSIIKNREDKDDRAVTIDLVDKLAI
LCKEKAPMIVLFFAPPYYPAVSSRNNKLIKEVVGEMERYAHFNHNITFENQNYFGGISDLSYVGLQNPLHSMSSLVDNMP
LWDKGYSIPLQELEEFDVPVLNMGPVGKDAHQWTERLDVNYAFETLLDMLPICIEKLLVSNKITQV
>Mature_545_residues
SKWQSKEQLIQLVSGLVEIPSITGTEAEVILPDFVVEQLSDLQYFKENPHHLQKNPTGDGRYFVTALVKKSDSTKNTVIL
VSHFDVVDVQDYGVWKEDAFNPKKLTSMFYSHKDELPAHVREDIEQGDWLFGRGTMDMKCGLALQMAMIEQACEGRFDGN
VLLLAVPDEEVNSVGMRAAVPRLLDLAREHDLDYKTVLNSEPMFSRHPGDQKKYIYTGSIGKVLPGFLCYGKETHVGEPF
AGLNGSYMASLITAELELNTDLCDIVEGEASPPPTNLLQRDLKEDYSVQIPHRAVTLFNLFLLEKSMTDVVSLLRQKVTK
VAEKIEESYEKQAYRFSKYNPFIPPNLKVNVLTYEELIAYAIEQHGQEKIDDIQSSIIKNREDKDDRAVTIDLVDKLAIL
CKEKAPMIVLFFAPPYYPAVSSRNNKLIKEVVGEMERYAHFNHNITFENQNYFGGISDLSYVGLQNPLHSMSSLVDNMPL
WDKGYSIPLQELEEFDVPVLNMGPVGKDAHQWTERLDVNYAFETLLDMLPICIEKLLVSNKITQV

Specific function: Unknown

COG id: COG4187

COG function: function code E; Arginine degradation protein (predicted deacylase)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis rocB [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002933
- InterPro:   IPR012166 [H]

Pfam domain/function: PF01546 Peptidase_M20 [H]

EC number: NA

Molecular weight: Translated: 61972; Mature: 61840

Theoretical pI: Translated: 4.73; Mature: 4.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKWQSKEQLIQLVSGLVEIPSITGTEAEVILPDFVVEQLSDLQYFKENPHHLQKNPTGD
CCCCCHHHHHHHHHHHHHHCCCCCCCCCCEECHHHHHHHHHHHHHHHCCCCCCCCCCCCC
GRYFVTALVKKSDSTKNTVILVSHFDVVDVQDYGVWKEDAFNPKKLTSMFYSHKDELPAH
CCEEEEEEECCCCCCCCEEEEEEECCEEECHHCCCCHHCCCCHHHHHHHHHHCCCCCCHH
VREDIEQGDWLFGRGTMDMKCGLALQMAMIEQACEGRFDGNVLLLAVPDEEVNSVGMRAA
HHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHH
VPRLLDLAREHDLDYKTVLNSEPMFSRHPGDQKKYIYTGSIGKVLPGFLCYGKETHVGEP
HHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHCCCCCCCCCCC
FAGLNGSYMASLITAELELNTDLCDIVEGEASPPPTNLLQRDLKEDYSVQIPHRAVTLFN
CCCCCHHHHHHHHHHHEECCCCHHHHHCCCCCCCHHHHHHHHHHCCCEEECCHHHHHHHH
LFLLEKSMTDVVSLLRQKVTKVAEKIEESYEKQAYRFSKYNPFIPPNLKVNVLTYEELIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEHHHHHH
YAIEQHGQEKIDDIQSSIIKNREDKDDRAVTIDLVDKLAILCKEKAPMIVLFFAPPYYPA
HHHHHHCHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHCCCCCEEEEEECCCCCCC
VSSRNNKLIKEVVGEMERYAHFNHNITFENQNYFGGISDLSYVGLQNPLHSMSSLVDNMP
CCCCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHCCCHHHHHHHHHHCCC
LWDKGYSIPLQELEEFDVPVLNMGPVGKDAHQWTERLDVNYAFETLLDMLPICIEKLLVS
CCCCCCCCCHHHHHHCCCCEECCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
NKITQV
HHHCCC
>Mature Secondary Structure 
SKWQSKEQLIQLVSGLVEIPSITGTEAEVILPDFVVEQLSDLQYFKENPHHLQKNPTGD
CCCCHHHHHHHHHHHHHHCCCCCCCCCCEECHHHHHHHHHHHHHHHCCCCCCCCCCCCC
GRYFVTALVKKSDSTKNTVILVSHFDVVDVQDYGVWKEDAFNPKKLTSMFYSHKDELPAH
CCEEEEEEECCCCCCCCEEEEEEECCEEECHHCCCCHHCCCCHHHHHHHHHHCCCCCCHH
VREDIEQGDWLFGRGTMDMKCGLALQMAMIEQACEGRFDGNVLLLAVPDEEVNSVGMRAA
HHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHH
VPRLLDLAREHDLDYKTVLNSEPMFSRHPGDQKKYIYTGSIGKVLPGFLCYGKETHVGEP
HHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHCCCCCCCCCCC
FAGLNGSYMASLITAELELNTDLCDIVEGEASPPPTNLLQRDLKEDYSVQIPHRAVTLFN
CCCCCHHHHHHHHHHHEECCCCHHHHHCCCCCCCHHHHHHHHHHCCCEEECCHHHHHHHH
LFLLEKSMTDVVSLLRQKVTKVAEKIEESYEKQAYRFSKYNPFIPPNLKVNVLTYEELIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEHHHHHH
YAIEQHGQEKIDDIQSSIIKNREDKDDRAVTIDLVDKLAILCKEKAPMIVLFFAPPYYPA
HHHHHHCHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHCCCCCEEEEEECCCCCCC
VSSRNNKLIKEVVGEMERYAHFNHNITFENQNYFGGISDLSYVGLQNPLHSMSSLVDNMP
CCCCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHCCCHHHHHHHHHHCCC
LWDKGYSIPLQELEEFDVPVLNMGPVGKDAHQWTERLDVNYAFETLLDMLPICIEKLLVS
CCCCCCCCCHHHHHHCCCCEECCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
NKITQV
HHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]