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The map label for this gene is ykgA [C]

Identifier: 227814143

GI number: 227814143

Start: 1420355

End: 1421245

Strand: Direct

Name: ykgA [C]

Synonym: BAMEG_1551

Alternate gene names: 227814143

Gene position: 1420355-1421245 (Clockwise)

Preceding gene: 227814142

Following gene: 227814144

Centisome position: 27.16

GC content: 33.56

Gene sequence:

>891_bases
ATGGAGAATAAACAAAGTAGAAATGAGTATTTACAGCGCATATACAAAGTACAAAATTATATAGAATTACACATAAATGA
TTCACTATCCATTGAAGAGCTAGCGGATATAGCAGGATTTTCAAAGTATCATTTTCATAGAATTTTTAAAGGGATAGTAG
ATGAACCATTATCTCGGTATGTAAACCGCTTGAAACTGGAAAGGGCAACAAACCTTCTTACATACCGTTCGGATATGACG
ATTACTGATATCACTTACCATTTTGGTTTCACAGATTCGGCAGTTTTCTCCCGTACATTTAAAAATTATTATGGAGTAAG
TCCGTCTCAATATCGAAACGACAATAGCAAGAATTGCAAAGACGTAAGAAGAATTTCTCAATACAATGAATGTAAGAAGG
TTCGAAGGAATGTTGAAATTGTAACAGTAGACAATATAAACGTCGCATACATAAGGCATATCGGTACATATGAAGAGTTA
ACTATAGCTTTTCCGAAAATGATAGAGAAACTATTTCAATACGCAACCAAGCAAAACTATCATGTATTTGAGGATACGAA
AGTATTAACCATTTACCACGATCATCATGAATTTACGGAGGACAATCATTTAAGAACAAGTTTATGTATAACAATTCCAG
GTGAATCTGCAATAGAAACGAACGACATTGGAATAATGGTAATACCTTCAGGCAAGTATGCAGTAGGACATTTTGAAATA
TTCCAAGATGAATATAAAAGAGCATGGGACTTTATATATGGTGAGTGGCTGCCAAATAGCGGATATAAACCGAGAGACTC
ATATCCTTTTGAAGTATATAGAAATGATCCAAAGCAGCATCCAAAGCATAAACATATAGTTGATATATATGTACCTATCG
AACCTTTTTAA

Upstream 100 bases:

>100_bases
AAATTATGACGGGAACGGCGGTAGTAGAGTTTTATTTTTGAAAAATGTGTAAAAGTAGGCTAGCACAAAGTTAGCCTTTT
TGTTGTGAGGAGATAGAAGT

Downstream 100 bases:

>100_bases
TTATAGGTTAAAGGGGAAGGAATAATGAAAACTGCTGAAAAGTTAGATCAGATTATAAAAGAAGAATATAAAAATATGAA
TGGTATGTTAGTAGTGCAGA

Product: transcriptional regulator, AraC family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MENKQSRNEYLQRIYKVQNYIELHINDSLSIEELADIAGFSKYHFHRIFKGIVDEPLSRYVNRLKLERATNLLTYRSDMT
ITDITYHFGFTDSAVFSRTFKNYYGVSPSQYRNDNSKNCKDVRRISQYNECKKVRRNVEIVTVDNINVAYIRHIGTYEEL
TIAFPKMIEKLFQYATKQNYHVFEDTKVLTIYHDHHEFTEDNHLRTSLCITIPGESAIETNDIGIMVIPSGKYAVGHFEI
FQDEYKRAWDFIYGEWLPNSGYKPRDSYPFEVYRNDPKQHPKHKHIVDIYVPIEPF

Sequences:

>Translated_296_residues
MENKQSRNEYLQRIYKVQNYIELHINDSLSIEELADIAGFSKYHFHRIFKGIVDEPLSRYVNRLKLERATNLLTYRSDMT
ITDITYHFGFTDSAVFSRTFKNYYGVSPSQYRNDNSKNCKDVRRISQYNECKKVRRNVEIVTVDNINVAYIRHIGTYEEL
TIAFPKMIEKLFQYATKQNYHVFEDTKVLTIYHDHHEFTEDNHLRTSLCITIPGESAIETNDIGIMVIPSGKYAVGHFEI
FQDEYKRAWDFIYGEWLPNSGYKPRDSYPFEVYRNDPKQHPKHKHIVDIYVPIEPF
>Mature_296_residues
MENKQSRNEYLQRIYKVQNYIELHINDSLSIEELADIAGFSKYHFHRIFKGIVDEPLSRYVNRLKLERATNLLTYRSDMT
ITDITYHFGFTDSAVFSRTFKNYYGVSPSQYRNDNSKNCKDVRRISQYNECKKVRRNVEIVTVDNINVAYIRHIGTYEEL
TIAFPKMIEKLFQYATKQNYHVFEDTKVLTIYHDHHEFTEDNHLRTSLCITIPGESAIETNDIGIMVIPSGKYAVGHFEI
FQDEYKRAWDFIYGEWLPNSGYKPRDSYPFEVYRNDPKQHPKHKHIVDIYVPIEPF

Specific function: Unknown

COG id: COG3449

COG function: function code L; DNA gyrase inhibitor

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 HTH araC/xylS-type DNA-binding domains [H]

Homologues:

Organism=Escherichia coli, GI87081928, Length=102, Percent_Identity=31.3725490196078, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017853
- InterPro:   IPR013781
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 35214; Mature: 35214

Theoretical pI: Translated: 7.23; Mature: 7.23

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENKQSRNEYLQRIYKVQNYIELHINDSLSIEELADIAGFSKYHFHRIFKGIVDEPLSRY
CCCHHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
VNRLKLERATNLLTYRSDMTITDITYHFGFTDSAVFSRTFKNYYGVSPSQYRNDNSKNCK
HHHHHHHHHHHHEEEECCCEEEEEEEECCCCCHHHHHHHHHHHCCCCHHHHCCCCCCCHH
DVRRISQYNECKKVRRNVEIVTVDNINVAYIRHIGTYEELTIAFPKMIEKLFQYATKQNY
HHHHHHHHHHHHHHHCCEEEEEECCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCC
HVFEDTKVLTIYHDHHEFTEDNHLRTSLCITIPGESAIETNDIGIMVIPSGKYAVGHFEI
EEECCCEEEEEEECCCCCCCCCCEEEEEEEEECCCCCEEECCEEEEEECCCCEEEHHHHH
FQDEYKRAWDFIYGEWLPNSGYKPRDSYPFEVYRNDPKQHPKHKHIVDIYVPIEPF
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEEEEECCCC
>Mature Secondary Structure
MENKQSRNEYLQRIYKVQNYIELHINDSLSIEELADIAGFSKYHFHRIFKGIVDEPLSRY
CCCHHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
VNRLKLERATNLLTYRSDMTITDITYHFGFTDSAVFSRTFKNYYGVSPSQYRNDNSKNCK
HHHHHHHHHHHHEEEECCCEEEEEEEECCCCCHHHHHHHHHHHCCCCHHHHCCCCCCCHH
DVRRISQYNECKKVRRNVEIVTVDNINVAYIRHIGTYEELTIAFPKMIEKLFQYATKQNY
HHHHHHHHHHHHHHHCCEEEEEECCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCC
HVFEDTKVLTIYHDHHEFTEDNHLRTSLCITIPGESAIETNDIGIMVIPSGKYAVGHFEI
EEECCCEEEEEEECCCCCCCCCCEEEEEEEEECCCCCEEECCEEEEEECCCCEEEHHHHH
FQDEYKRAWDFIYGEWLPNSGYKPRDSYPFEVYRNDPKQHPKHKHIVDIYVPIEPF
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12044378 [H]