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The map label for this gene is dcyD [H]

Identifier: 227813973

GI number: 227813973

Start: 1257439

End: 1258434

Strand: Direct

Name: dcyD [H]

Synonym: BAMEG_1379

Alternate gene names: 227813973

Gene position: 1257439-1258434 (Clockwise)

Preceding gene: 227813972

Following gene: 227813975

Centisome position: 24.04

GC content: 39.56

Gene sequence:

>996_bases
ATGAATTTAGCTAAATTCCCGAGAAAAAAATATACAGAGTCATATACACCAATTGAAAAATTAAACAATTTTTCAGAAGC
ACTTGGTGGGCCGACTATTTATTTTAAACGAGATGATTTACTTGGTTTAACAGCTGGTGGTAATAAGACGAGAAAGTTAG
AGTTTTTAGTTGCGGATGCACAGGCAAAGGGTGCAGATACGTTAATTACAGCTGGTGGTATTCAGTCAAATCATTGCCGC
CTAACACTTGCAGCGGCGGTAAAAGAAAAAATGAAATGTATCCTTGTATTAGAAGAAGGGCTTGAGCCAGAAGAGAAGCC
AGACTTTAATGGAAACTATTTCTTATATCATTTACTAGGTGCTGAAAATGTCATTGTTGTACCGAACGGAGCAGATCTTA
TGGAAGAGATGCATAAAGCCGCGAAAGAAGTTAGTGAAAAAGGGAATACACCATATGTCATTCCGGTCGGTGGATCGAAT
CCTACTGGAGCAATGGGATACGTTGCTTGTGCGCAAGAAATTATAGCGCAATCATTTGACCAAGGAATTGATTTCAGTTC
AGTCGTTTGCGTAAGTGGTAGCGGCGGTATGCACGCTGGTTTAATTACAGGTTTTGCTGGAACACAAAGTAACATCCCTG
TAATCGGAATTAACGTAAGTAGAGGAAAAGCAGAGCAAGAAGAGAAAGTAGCAAAACTTGTAGATGAAACGTCAGCTCAT
GTTGGTATTCCAAACTTTATCCCGCGCGAAGCGGTTACATGCTTTGATGAATATGTAGGACCGGGTTACGCGTTACCAAC
GCCAGAAATGGTGGAAGCAGTGCAGCTGTTAGCAAAAACAGAAGGTATTTTACTTGATCCAGTATATACAGGTAAAGCAG
TAGCGGGATTAATCGACTTAATTAGAAAAGGTACATTTAATAAAGAGGATAACATTTTATTCGTACATTCAGGTGGTTCA
CCAGCTTTATATGCGAATACATCTTTATTCGCGTAA

Upstream 100 bases:

>100_bases
CCAATACATTTTTCCCCCAGAAAGATGACTTCATCATTTTTACATGCAATAATAGTAACGTTACATACATTGTGAAAGAA
GTACAAAAGGAGCGTTATTC

Downstream 100 bases:

>100_bases
GTATGAAAAAGCATTGGGTATCCAATGCTTTTTGTTATATACTGGAATTATCACAGTGTGGGAGGGGGAGTATATGAGTT
CAAATTTAAAATGGATCATA

Product: D-cysteine desulfhydrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 331; Mature: 331

Protein sequence:

>331_residues
MNLAKFPRKKYTESYTPIEKLNNFSEALGGPTIYFKRDDLLGLTAGGNKTRKLEFLVADAQAKGADTLITAGGIQSNHCR
LTLAAAVKEKMKCILVLEEGLEPEEKPDFNGNYFLYHLLGAENVIVVPNGADLMEEMHKAAKEVSEKGNTPYVIPVGGSN
PTGAMGYVACAQEIIAQSFDQGIDFSSVVCVSGSGGMHAGLITGFAGTQSNIPVIGINVSRGKAEQEEKVAKLVDETSAH
VGIPNFIPREAVTCFDEYVGPGYALPTPEMVEAVQLLAKTEGILLDPVYTGKAVAGLIDLIRKGTFNKEDNILFVHSGGS
PALYANTSLFA

Sequences:

>Translated_331_residues
MNLAKFPRKKYTESYTPIEKLNNFSEALGGPTIYFKRDDLLGLTAGGNKTRKLEFLVADAQAKGADTLITAGGIQSNHCR
LTLAAAVKEKMKCILVLEEGLEPEEKPDFNGNYFLYHLLGAENVIVVPNGADLMEEMHKAAKEVSEKGNTPYVIPVGGSN
PTGAMGYVACAQEIIAQSFDQGIDFSSVVCVSGSGGMHAGLITGFAGTQSNIPVIGINVSRGKAEQEEKVAKLVDETSAH
VGIPNFIPREAVTCFDEYVGPGYALPTPEMVEAVQLLAKTEGILLDPVYTGKAVAGLIDLIRKGTFNKEDNILFVHSGGS
PALYANTSLFA
>Mature_331_residues
MNLAKFPRKKYTESYTPIEKLNNFSEALGGPTIYFKRDDLLGLTAGGNKTRKLEFLVADAQAKGADTLITAGGIQSNHCR
LTLAAAVKEKMKCILVLEEGLEPEEKPDFNGNYFLYHLLGAENVIVVPNGADLMEEMHKAAKEVSEKGNTPYVIPVGGSN
PTGAMGYVACAQEIIAQSFDQGIDFSSVVCVSGSGGMHAGLITGFAGTQSNIPVIGINVSRGKAEQEEKVAKLVDETSAH
VGIPNFIPREAVTCFDEYVGPGYALPTPEMVEAVQLLAKTEGILLDPVYTGKAVAGLIDLIRKGTFNKEDNILFVHSGGS
PALYANTSLFA

Specific function: Catalyzes the alpha,beta-elimination reaction of D- cysteine and of several D-cysteine derivatives. It could be a defense mechanism against D-cysteine [H]

COG id: COG2515

COG function: function code E; 1-aminocyclopropane-1-carboxylate deaminase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ACC deaminase/D-cysteine desulfhydrase family [H]

Homologues:

Organism=Escherichia coli, GI87082000, Length=329, Percent_Identity=45.8966565349544, Blast_Score=257, Evalue=6e-70,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005966
- InterPro:   IPR001926 [H]

Pfam domain/function: PF00291 PALP [H]

EC number: =4.4.1.15 [H]

Molecular weight: Translated: 35306; Mature: 35306

Theoretical pI: Translated: 4.97; Mature: 4.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLAKFPRKKYTESYTPIEKLNNFSEALGGPTIYFKRDDLLGLTAGGNKTRKLEFLVADA
CCCCCCCHHHHCCCCCCHHHHHHHHHHHCCCEEEEECCCEEEEECCCCCCEEEEEEEECC
QAKGADTLITAGGIQSNHCRLTLAAAVKEKMKCILVLEEGLEPEEKPDFNGNYFLYHLLG
CCCCCCEEEEECCCCCCCEEEEHHHHHHHHCEEEEEEECCCCCCCCCCCCCCEEEEEEEC
AENVIVVPNGADLMEEMHKAAKEVSEKGNTPYVIPVGGSNPTGAMGYVACAQEIIAQSFD
CCCEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHH
QGIDFSSVVCVSGSGGMHAGLITGFAGTQSNIPVIGINVSRGKAEQEEKVAKLVDETSAH
CCCCCCEEEEEECCCCCEEHEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCC
VGIPNFIPREAVTCFDEYVGPGYALPTPEMVEAVQLLAKTEGILLDPVYTGKAVAGLIDL
CCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHH
IRKGTFNKEDNILFVHSGGSPALYANTSLFA
HHCCCCCCCCCEEEEECCCCCEEEECCEECC
>Mature Secondary Structure
MNLAKFPRKKYTESYTPIEKLNNFSEALGGPTIYFKRDDLLGLTAGGNKTRKLEFLVADA
CCCCCCCHHHHCCCCCCHHHHHHHHHHHCCCEEEEECCCEEEEECCCCCCEEEEEEEECC
QAKGADTLITAGGIQSNHCRLTLAAAVKEKMKCILVLEEGLEPEEKPDFNGNYFLYHLLG
CCCCCCEEEEECCCCCCCEEEEHHHHHHHHCEEEEEEECCCCCCCCCCCCCCEEEEEEEC
AENVIVVPNGADLMEEMHKAAKEVSEKGNTPYVIPVGGSNPTGAMGYVACAQEIIAQSFD
CCCEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHH
QGIDFSSVVCVSGSGGMHAGLITGFAGTQSNIPVIGINVSRGKAEQEEKVAKLVDETSAH
CCCCCCEEEEEECCCCCEEHEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCC
VGIPNFIPREAVTCFDEYVGPGYALPTPEMVEAVQLLAKTEGILLDPVYTGKAVAGLIDL
CCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHH
IRKGTFNKEDNILFVHSGGSPALYANTSLFA
HHCCCCCCCCCEEEEECCCCCEEEECCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA