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The map label for this gene is ybjS [H]

Identifier: 227813963

GI number: 227813963

Start: 1248556

End: 1249542

Strand: Direct

Name: ybjS [H]

Synonym: BAMEG_1369

Alternate gene names: 227813963

Gene position: 1248556-1249542 (Clockwise)

Preceding gene: 227813962

Following gene: 227813964

Centisome position: 23.87

GC content: 36.68

Gene sequence:

>987_bases
ATGAAAATGCTAGTAACTGGTGGAACGGGCTTTCTCGGACAAAAACTCGCCTTTCGACTGAAGAATATGGGCTATGAAGT
AACGGCAACGGGAAGAAATAAAACAATCGGTAAGGTATTAGAACAAAATGGAATCAAGTTTGTTCATTGTCCTCTTGAAG
ACAGGGAGCGTGTGCTACAAGTTTGTAAAGATAAAGATTATATCTTTCATAGCGGTGCACATTCTTCCCCTTGGGGCAAA
TATGAAGATTTTTATAATGCAAATGTGTTAGGAACGAAACATATTATCGAGGGAAGTCAAAAGTACGGTATAAAACGCCT
TATCCACGTATCAACACCAAGCATTTATTTCTATTATGATGAGCGACAAAATGTAGTAGAAAATGCGAAACTTCCTGATA
CGTTTGTAAATCACTATGCAACAACGAAGTACATGGCTGAACAAGCTATTGATCAAGCTTTCGCGCATGGTTTACCAGTT
ATCACAATACGCCCGCGCGCTTTATTTGGACCAGGAGATAACGCGATTCTTCCGCGTCTTATTAAAGTATGTGAAAAAGG
GGCTTTGCCGAGAATTGGTACAGAAAATGTTCTTGTGGATATTACGTATGTTGAGAATGTTGTAGATGCTTTACTTCTTT
GTATGCATTCCCCAAAACATACATTAGGGCAAAAGTACAATATAACAAATGACGAACGTATCAATTTATATGAGGTCATA
GAAAATGTAATGAAGCGCCTTGATAAGGAAGTACGATATAAAAAAATTTCCTACAAAACTGCTTTTACACTAGCGGCTAT
ATTAGAAGGAATCTCAAAAACTATTTTATTCGGAAAAGAACCTATTCTTACAAAGTATACTGTTAGTGTCCTTTCAAAAA
GCCAGACGTTAAGTATTGATAAAGCTAAAGAAGAACTAGGATATGCTCCAAAGGTCAGTATAGAAGAAGGAATTACAAAA
TTTGTAGACTGGTGGAAAACACAATGA

Upstream 100 bases:

>100_bases
AGTTTTTTAGCATGTACAAATTAAGGCGTGAAAGTTATAAATATGAACGGACTATTTTAGAGCAAACAACATATGACATA
TCGTGGGATGGTGAAGATTT

Downstream 100 bases:

>100_bases
AAATCAAATCTTTAAAGCTATATGATACAGGATATTGTACACATCCAGAAAAAATTGCATACTCCAAGGGCAGTTGGAAA
CAAATCTGTTTTCCAGCAAC

Product: 3-beta hydroxysteroid dehydrogenase/isomerase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 328; Mature: 328

Protein sequence:

>328_residues
MKMLVTGGTGFLGQKLAFRLKNMGYEVTATGRNKTIGKVLEQNGIKFVHCPLEDRERVLQVCKDKDYIFHSGAHSSPWGK
YEDFYNANVLGTKHIIEGSQKYGIKRLIHVSTPSIYFYYDERQNVVENAKLPDTFVNHYATTKYMAEQAIDQAFAHGLPV
ITIRPRALFGPGDNAILPRLIKVCEKGALPRIGTENVLVDITYVENVVDALLLCMHSPKHTLGQKYNITNDERINLYEVI
ENVMKRLDKEVRYKKISYKTAFTLAAILEGISKTILFGKEPILTKYTVSVLSKSQTLSIDKAKEELGYAPKVSIEEGITK
FVDWWKTQ

Sequences:

>Translated_328_residues
MKMLVTGGTGFLGQKLAFRLKNMGYEVTATGRNKTIGKVLEQNGIKFVHCPLEDRERVLQVCKDKDYIFHSGAHSSPWGK
YEDFYNANVLGTKHIIEGSQKYGIKRLIHVSTPSIYFYYDERQNVVENAKLPDTFVNHYATTKYMAEQAIDQAFAHGLPV
ITIRPRALFGPGDNAILPRLIKVCEKGALPRIGTENVLVDITYVENVVDALLLCMHSPKHTLGQKYNITNDERINLYEVI
ENVMKRLDKEVRYKKISYKTAFTLAAILEGISKTILFGKEPILTKYTVSVLSKSQTLSIDKAKEELGYAPKVSIEEGITK
FVDWWKTQ
>Mature_328_residues
MKMLVTGGTGFLGQKLAFRLKNMGYEVTATGRNKTIGKVLEQNGIKFVHCPLEDRERVLQVCKDKDYIFHSGAHSSPWGK
YEDFYNANVLGTKHIIEGSQKYGIKRLIHVSTPSIYFYYDERQNVVENAKLPDTFVNHYATTKYMAEQAIDQAFAHGLPV
ITIRPRALFGPGDNAILPRLIKVCEKGALPRIGTENVLVDITYVENVVDALLLCMHSPKHTLGQKYNITNDERINLYEVI
ENVMKRLDKEVRYKKISYKTAFTLAAILEGISKTILFGKEPILTKYTVSVLSKSQTLSIDKAKEELGYAPKVSIEEGITK
FVDWWKTQ

Specific function: Unknown

COG id: COG0451

COG function: function code MG; Nucleoside-diphosphate-sugar epimerases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI193211614, Length=335, Percent_Identity=28.955223880597, Blast_Score=122, Evalue=6e-28,
Organism=Homo sapiens, GI8393516, Length=335, Percent_Identity=28.955223880597, Blast_Score=122, Evalue=6e-28,
Organism=Homo sapiens, GI239745448, Length=330, Percent_Identity=26.3636363636364, Blast_Score=105, Evalue=8e-23,
Organism=Homo sapiens, GI310132178, Length=330, Percent_Identity=26.3636363636364, Blast_Score=104, Evalue=1e-22,
Organism=Homo sapiens, GI310113012, Length=330, Percent_Identity=26.3636363636364, Blast_Score=104, Evalue=1e-22,
Organism=Homo sapiens, GI116268111, Length=351, Percent_Identity=26.4957264957265, Blast_Score=102, Evalue=5e-22,
Organism=Homo sapiens, GI260763931, Length=352, Percent_Identity=23.2954545454545, Blast_Score=69, Evalue=7e-12,
Organism=Homo sapiens, GI4504509, Length=352, Percent_Identity=23.2954545454545, Blast_Score=69, Evalue=7e-12,
Organism=Homo sapiens, GI4504507, Length=362, Percent_Identity=24.8618784530387, Blast_Score=68, Evalue=1e-11,
Organism=Escherichia coli, GI87081792, Length=336, Percent_Identity=35.4166666666667, Blast_Score=190, Evalue=1e-49,
Organism=Escherichia coli, GI1788353, Length=359, Percent_Identity=25.0696378830084, Blast_Score=65, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17570557, Length=336, Percent_Identity=22.9166666666667, Blast_Score=89, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17509709, Length=358, Percent_Identity=22.9050279329609, Blast_Score=88, Evalue=5e-18,
Organism=Caenorhabditis elegans, GI193211272, Length=342, Percent_Identity=25.1461988304094, Blast_Score=80, Evalue=1e-15,
Organism=Saccharomyces cerevisiae, GI6321437, Length=346, Percent_Identity=30.0578034682081, Blast_Score=120, Evalue=3e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001509
- InterPro:   IPR016040 [H]

Pfam domain/function: PF01370 Epimerase [H]

EC number: NA

Molecular weight: Translated: 37203; Mature: 37203

Theoretical pI: Translated: 9.45; Mature: 9.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKMLVTGGTGFLGQKLAFRLKNMGYEVTATGRNKTIGKVLEQNGIKFVHCPLEDRERVLQ
CEEEEECCCCHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHCCCEEEECCHHHHHHHHH
VCKDKDYIFHSGAHSSPWGKYEDFYNANVLGTKHIIEGSQKYGIKRLIHVSTPSIYFYYD
HHCCCCCEEECCCCCCCCCCCHHHCCCCCCCHHHHHCCCHHHCCEEEEEECCCEEEEEEC
ERQNVVENAKLPDTFVNHYATTKYMAEQAIDQAFAHGLPVITIRPRALFGPGDNAILPRL
CCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEECCCCCCHHHHH
IKVCEKGALPRIGTENVLVDITYVENVVDALLLCMHSPKHTLGQKYNITNDERINLYEVI
HHHHHCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCHHHHH
ENVMKRLDKEVRYKKISYKTAFTLAAILEGISKTILFGKEPILTKYTVSVLSKSQTLSID
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHEEHH
KAKEELGYAPKVSIEEGITKFVDWWKTQ
HHHHHCCCCCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKMLVTGGTGFLGQKLAFRLKNMGYEVTATGRNKTIGKVLEQNGIKFVHCPLEDRERVLQ
CEEEEECCCCHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHCCCEEEECCHHHHHHHHH
VCKDKDYIFHSGAHSSPWGKYEDFYNANVLGTKHIIEGSQKYGIKRLIHVSTPSIYFYYD
HHCCCCCEEECCCCCCCCCCCHHHCCCCCCCHHHHHCCCHHHCCEEEEEECCCEEEEEEC
ERQNVVENAKLPDTFVNHYATTKYMAEQAIDQAFAHGLPVITIRPRALFGPGDNAILPRL
CCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEECCCCCCHHHHH
IKVCEKGALPRIGTENVLVDITYVENVVDALLLCMHSPKHTLGQKYNITNDERINLYEVI
HHHHHCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCHHHHH
ENVMKRLDKEVRYKKISYKTAFTLAAILEGISKTILFGKEPILTKYTVSVLSKSQTLSID
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHEEHH
KAKEELGYAPKVSIEEGITKFVDWWKTQ
HHHHHCCCCCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]