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The map label for this gene is yocD [H]

Identifier: 227813939

GI number: 227813939

Start: 1225383

End: 1226375

Strand: Reverse

Name: yocD [H]

Synonym: BAMEG_1345

Alternate gene names: 227813939

Gene position: 1226375-1225383 (Counterclockwise)

Preceding gene: 227813941

Following gene: 227813931

Centisome position: 23.45

GC content: 37.76

Gene sequence:

>993_bases
GTGGCAACAGTAAGTCCTTCATGGGGAGGCGCAGGTGATCCTGAAATAAGATGGCGTTATGAACAAGGAGTAAAGAGATT
AGAAGAGGTTTTCGGTCTTATGGTTATCCCAATGCCCAATAGTTTAAAAGGTAGCGAATTCATTTATAACAACCCACAGG
CTCGTGCGGAAGATTTAATGACAGCATTTAAAGATGCGCGCGTGAAAGCAATTATTGCAAATATTGGCGGTGAAGATAGC
ATTCGTTTACTTCCTCATATAGATTTTAATGTGATACGTGAAAGCCCGAAAATTTTTATGGGATACTCTGACGTTACCGT
CTCACATTTATTTTGCCATAAAGCAGGTCTTTCCTCTTTTTACGGTCCAGCAAATTTGACCGACTTTGCCGAGAATATAG
AGATGGATCCATATACGGTTGAAATGGTAAATCGAACTCTCTTTTCAAATGAAATGATTGGCGAGATTCAACCAGCTCAT
AAATGGACGAGTGAGCGTTTAGAATGGATCGAAATAAATAAGGATACAAGACGTAAGATGCAGCAAAACAACGGATATGA
GTTACTTCAAGGCTCTACTACTGTACAAGGGCGCTTAATTGGTGGTTGCATTGAAGTACTTGAATTTGCAAAAGGAACGG
AACTTTGGCCTGAGAAAAAACATTGGGAGGATAGTATTATCTTCTTTGAAACTTCTGAAGATCACCCAGAACCAAGTTAT
ATAAAGTATTGGTTACGAAATTATGCAGCGCAAGGCATTCTGAAAAAAGCAAAAGGAATCATTTTTGGTAAACCGAAAGA
TGAACAATACTATGAAGAATATAAACATGAAATACTGCAGGTTATGAAGGAACATCATTTAGAAAATTTGCCGATTCTTT
ATAATTTAAATTTCGGCCATACTGAACCGAAGTTTATTTTACCTTACGGTGCGATGGCAGAAATTGATTGTGAAAATGGA
TCTTTCTCTATTTTAGAGAGTGGCGTGGAATAA

Upstream 100 bases:

>100_bases
ATTTTTCAATGCTACGGTTTGTATAATCGTATTTCATTACATTATGTAGGGCGGAATTCATATGTTAATAAAACCAAACA
GATTACAGCCAGGAGATATC

Downstream 100 bases:

>100_bases
AGTGAAACTTTAATCAGTGGGGGTTCCATTCACATCGCTACCAAGTTAACATTTTGAAGTTCTCCCAGAACGAAAATTTA
TTCTTTTCATAGGTATTCAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 330; Mature: 329

Protein sequence:

>330_residues
MATVSPSWGGAGDPEIRWRYEQGVKRLEEVFGLMVIPMPNSLKGSEFIYNNPQARAEDLMTAFKDARVKAIIANIGGEDS
IRLLPHIDFNVIRESPKIFMGYSDVTVSHLFCHKAGLSSFYGPANLTDFAENIEMDPYTVEMVNRTLFSNEMIGEIQPAH
KWTSERLEWIEINKDTRRKMQQNNGYELLQGSTTVQGRLIGGCIEVLEFAKGTELWPEKKHWEDSIIFFETSEDHPEPSY
IKYWLRNYAAQGILKKAKGIIFGKPKDEQYYEEYKHEILQVMKEHHLENLPILYNLNFGHTEPKFILPYGAMAEIDCENG
SFSILESGVE

Sequences:

>Translated_330_residues
MATVSPSWGGAGDPEIRWRYEQGVKRLEEVFGLMVIPMPNSLKGSEFIYNNPQARAEDLMTAFKDARVKAIIANIGGEDS
IRLLPHIDFNVIRESPKIFMGYSDVTVSHLFCHKAGLSSFYGPANLTDFAENIEMDPYTVEMVNRTLFSNEMIGEIQPAH
KWTSERLEWIEINKDTRRKMQQNNGYELLQGSTTVQGRLIGGCIEVLEFAKGTELWPEKKHWEDSIIFFETSEDHPEPSY
IKYWLRNYAAQGILKKAKGIIFGKPKDEQYYEEYKHEILQVMKEHHLENLPILYNLNFGHTEPKFILPYGAMAEIDCENG
SFSILESGVE
>Mature_329_residues
ATVSPSWGGAGDPEIRWRYEQGVKRLEEVFGLMVIPMPNSLKGSEFIYNNPQARAEDLMTAFKDARVKAIIANIGGEDSI
RLLPHIDFNVIRESPKIFMGYSDVTVSHLFCHKAGLSSFYGPANLTDFAENIEMDPYTVEMVNRTLFSNEMIGEIQPAHK
WTSERLEWIEINKDTRRKMQQNNGYELLQGSTTVQGRLIGGCIEVLEFAKGTELWPEKKHWEDSIIFFETSEDHPEPSYI
KYWLRNYAAQGILKKAKGIIFGKPKDEQYYEEYKHEILQVMKEHHLENLPILYNLNFGHTEPKFILPYGAMAEIDCENGS
FSILESGVE

Specific function: L,D-carboxypeptidase [C]

COG id: COG1619

COG function: function code V; Uncharacterized proteins, homologs of microcin C7 resistance protein MccF

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S66 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003507 [H]

Pfam domain/function: PF02016 Peptidase_S66 [H]

EC number: NA

Molecular weight: Translated: 37884; Mature: 37752

Theoretical pI: Translated: 4.97; Mature: 4.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATVSPSWGGAGDPEIRWRYEQGVKRLEEVFGLMVIPMPNSLKGSEFIYNNPQARAEDLM
CCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHCEEEEECCCCCCCCCEEECCCHHHHHHHH
TAFKDARVKAIIANIGGEDSIRLLPHIDFNVIRESPKIFMGYSDVTVSHLFCHKAGLSSF
HHHHHHHEEEEEEECCCCCCEEEECCCCHHHCCCCCCEEEECCHHHHHHHHHHHHCHHHC
YGPANLTDFAENIEMDPYTVEMVNRTLFSNEMIGEIQPAHKWTSERLEWIEINKDTRRKM
CCCCCHHHHHHCCCCCCCHHHHHHHHHHCCHHHHCCCCHHHHHHHCCEEEECCHHHHHHH
QQNNGYELLQGSTTVQGRLIGGCIEVLEFAKGTELWPEKKHWEDSIIFFETSEDHPEPSY
HHCCCEEEEECCCEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCHHH
IKYWLRNYAAQGILKKAKGIIFGKPKDEQYYEEYKHEILQVMKEHHLENLPILYNLNFGH
HHHHHHHHHHHHHHHHHCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCC
TEPKFILPYGAMAEIDCENGSFSILESGVE
CCCCEEECCCCEEEEECCCCCCHHHHCCCC
>Mature Secondary Structure 
ATVSPSWGGAGDPEIRWRYEQGVKRLEEVFGLMVIPMPNSLKGSEFIYNNPQARAEDLM
CCCCCCCCCCCCCCEEEEHHHHHHHHHHHHCEEEEECCCCCCCCCEEECCCHHHHHHHH
TAFKDARVKAIIANIGGEDSIRLLPHIDFNVIRESPKIFMGYSDVTVSHLFCHKAGLSSF
HHHHHHHEEEEEEECCCCCCEEEECCCCHHHCCCCCCEEEECCHHHHHHHHHHHHCHHHC
YGPANLTDFAENIEMDPYTVEMVNRTLFSNEMIGEIQPAHKWTSERLEWIEINKDTRRKM
CCCCCHHHHHHCCCCCCCHHHHHHHHHHCCHHHHCCCCHHHHHHHCCEEEECCHHHHHHH
QQNNGYELLQGSTTVQGRLIGGCIEVLEFAKGTELWPEKKHWEDSIIFFETSEDHPEPSY
HHCCCEEEEECCCEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCHHH
IKYWLRNYAAQGILKKAKGIIFGKPKDEQYYEEYKHEILQVMKEHHLENLPILYNLNFGH
HHHHHHHHHHHHHHHHHCCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCC
TEPKFILPYGAMAEIDCENGSFSILESGVE
CCCCEEECCCCEEEEECCCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]