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The map label for this gene is ydeS [H]

Identifier: 227813913

GI number: 227813913

Start: 1196914

End: 1197417

Strand: Reverse

Name: ydeS [H]

Synonym: BAMEG_1319

Alternate gene names: 227813913

Gene position: 1197417-1196914 (Counterclockwise)

Preceding gene: 227813919

Following gene: 227813902

Centisome position: 22.89

GC content: 39.88

Gene sequence:

>504_bases
TTGGAAAGTGGTTTTAAAGCAGTCACAGTCGATAAAATTGCAGACCGTGCTAAAGTCAGCAAAGCTACGATTTATAAATG
GTGGCCAAATAAGGCTGCTGTCGTAATGGATGGTTTTCTTTCTGCTGCTGCTGCCAGATTGCCTGTACCTGACACAGGTT
CAGCATTGAATGATATTTTAACTCACGCTACAAGTTTAGCCAATTTTTTAATCAGTCGAGAAGGAACTATTATCAATGAG
TTAGTTGGTGAAGGGCAATTTGATTCGAAACTAGCAGAGGAATATCGTGCTCGATATTTCCAACCACGTCGACTGCAAGC
AAAGCAACTTCTGGAGAAGGGAATGAAAAGAGGAGAATTAAAAGAAAACCTCGATGTTGAATTAAGCATCGATCTCATTT
ACGGACCAATTTTTTATCGGTTGCTAGTAACCGGTGAGAAGTTGGATGATTCCTATGTACATGACTTGGTTATAAACGCA
TTCGAAGGGATACGTTTGAAGTAA

Upstream 100 bases:

>100_bases
TTATGTTTTGAAAGGAATGATTAATGTGCAAGGTAAAAGAGGTCGACCACGTAATATCGAAACCCAAAAGGCCATACTTT
CTGCGTCCTATGAGTTATTA

Downstream 100 bases:

>100_bases
TTAACATATAAACAAAGATTTAGATTTCCACTGTTTCCTATACCGATGTAACTTGCATTAACTTAATAAATAAAGTATCT
AATTTTTTAAAACTGTTGTA

Product: transcriptional regulator, TetR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 167; Mature: 167

Protein sequence:

>167_residues
MESGFKAVTVDKIADRAKVSKATIYKWWPNKAAVVMDGFLSAAAARLPVPDTGSALNDILTHATSLANFLISREGTIINE
LVGEGQFDSKLAEEYRARYFQPRRLQAKQLLEKGMKRGELKENLDVELSIDLIYGPIFYRLLVTGEKLDDSYVHDLVINA
FEGIRLK

Sequences:

>Translated_167_residues
MESGFKAVTVDKIADRAKVSKATIYKWWPNKAAVVMDGFLSAAAARLPVPDTGSALNDILTHATSLANFLISREGTIINE
LVGEGQFDSKLAEEYRARYFQPRRLQAKQLLEKGMKRGELKENLDVELSIDLIYGPIFYRLLVTGEKLDDSYVHDLVINA
FEGIRLK
>Mature_167_residues
MESGFKAVTVDKIADRAKVSKATIYKWWPNKAAVVMDGFLSAAAARLPVPDTGSALNDILTHATSLANFLISREGTIINE
LVGEGQFDSKLAEEYRARYFQPRRLQAKQLLEKGMKRGELKENLDVELSIDLIYGPIFYRLLVTGEKLDDSYVHDLVINA
FEGIRLK

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 18720; Mature: 18720

Theoretical pI: Translated: 7.67; Mature: 7.67

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESGFKAVTVDKIADRAKVSKATIYKWWPNKAAVVMDGFLSAAAARLPVPDTGSALNDIL
CCCCCCEEHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
THATSLANFLISREGTIINELVGEGQFDSKLAEEYRARYFQPRRLQAKQLLEKGMKRGEL
HHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCH
KENLDVELSIDLIYGPIFYRLLVTGEKLDDSYVHDLVINAFEGIRLK
HCCCCEEEEEHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MESGFKAVTVDKIADRAKVSKATIYKWWPNKAAVVMDGFLSAAAARLPVPDTGSALNDIL
CCCCCCEEHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
THATSLANFLISREGTIINELVGEGQFDSKLAEEYRARYFQPRRLQAKQLLEKGMKRGEL
HHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCH
KENLDVELSIDLIYGPIFYRLLVTGEKLDDSYVHDLVINAFEGIRLK
HCCCCEEEEEHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]