Click here to switch to the map view.

The map label for this gene is sdaAA1 [H]

Identifier: 227813910

GI number: 227813910

Start: 1193078

End: 1193968

Strand: Direct

Name: sdaAA1 [H]

Synonym: BAMEG_1316

Alternate gene names: 227813910

Gene position: 1193078-1193968 (Clockwise)

Preceding gene: 227813909

Following gene: 227813911

Centisome position: 22.81

GC content: 39.96

Gene sequence:

>891_bases
ATGTATATGGCCATAAAAGAAATTGTGGATGCAGCTAATAAAAGTCAAAAGACAATTTATGAATTAGCAATTGAACAGGA
AATTGAACAAACTAAAACTTCTTATGAAGAAGTTTGGAGTAAAATGGAACAAAATTTAGCGACTATGCAAAATGCTATAA
ATAAAAGTATCGAGGGCGACGGTGTATTTTCTCCAACCGGTTTAACCGGAGGTGATGCAGTTAAAATTAAAAACTATCGA
GAAAATAGGAAAACTCTTTCTGGAGATTTGATGGTGTTAGGGATTCAAAGTGCTATCGGCGTTAATGAAGTAAATGCTGC
ATTAGGAGCTATTTGTGCAACTCCAACAGCGGGTGCGAGTGGGACGATTCCGGGAGTCCTATTTAGTATTAAGGATACGT
TGCAGTTAAGTCATGAAGATATGATACATTTTCTATTCACATCAGCGTTATTTGGAACGATAGTAGCAAACAACGCTTGT
ATTTCAGGAGCGTATGGAGGATGTCAAGCTGAAATAGGAAGTGCCTCAGCGATGGCGGCTGCAGCTGCAGTAGAAGCTGC
GGGTGGAACGCCACAGCAATCTTCTGAAGCTTTTTCAATTGCGTTACAAAATTTACTCGGTTTAGTTTGTGATCCAGTCG
CTGGTTTGGTAGAAATTCCTTGTGTAAAGAGAAACGCCATTGGGACGGCAAATGCTTTAGCAGCAGGGGACATCGCATTA
GCCGGTGTAAACAATATCATCAATGCTGACGAAGTTATTGAAGCGATGTATAGAATTGGAAGACAGATGCCTCGCGAATT
AAGAGAGACAGGTTTAGGTGGAATTGCGGCTACACCTACAGGGATTGCCATTAAAAATAAAATATTTGGGGAGAAACAAT
CAAATCAATGA

Upstream 100 bases:

>100_bases
TTGGATTCGCTATTGCCTGGTAATGCTCAGAAGGAATTAGGGAATTTAAGCAATATAGCTAATCTTATTATTCTTTAGTT
ACATTAAGGAGAGAAAAAAT

Downstream 100 bases:

>100_bases
ACAGTTAACGTCTATATTGTGAAATATTTAACAATCTATTCTCTATTATTCGCTTAAGGATTTCTGGATATTGGGGGAAT
TATCAATAATATATCCTACT

Product: L-serine dehydratase, iron-sulfur-dependent, alpha subunit

Products: NA

Alternate protein names: SDH; L-serine deaminase; L-SD [H]

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MYMAIKEIVDAANKSQKTIYELAIEQEIEQTKTSYEEVWSKMEQNLATMQNAINKSIEGDGVFSPTGLTGGDAVKIKNYR
ENRKTLSGDLMVLGIQSAIGVNEVNAALGAICATPTAGASGTIPGVLFSIKDTLQLSHEDMIHFLFTSALFGTIVANNAC
ISGAYGGCQAEIGSASAMAAAAAVEAAGGTPQQSSEAFSIALQNLLGLVCDPVAGLVEIPCVKRNAIGTANALAAGDIAL
AGVNNIINADEVIEAMYRIGRQMPRELRETGLGGIAATPTGIAIKNKIFGEKQSNQ

Sequences:

>Translated_296_residues
MYMAIKEIVDAANKSQKTIYELAIEQEIEQTKTSYEEVWSKMEQNLATMQNAINKSIEGDGVFSPTGLTGGDAVKIKNYR
ENRKTLSGDLMVLGIQSAIGVNEVNAALGAICATPTAGASGTIPGVLFSIKDTLQLSHEDMIHFLFTSALFGTIVANNAC
ISGAYGGCQAEIGSASAMAAAAAVEAAGGTPQQSSEAFSIALQNLLGLVCDPVAGLVEIPCVKRNAIGTANALAAGDIAL
AGVNNIINADEVIEAMYRIGRQMPRELRETGLGGIAATPTGIAIKNKIFGEKQSNQ
>Mature_296_residues
MYMAIKEIVDAANKSQKTIYELAIEQEIEQTKTSYEEVWSKMEQNLATMQNAINKSIEGDGVFSPTGLTGGDAVKIKNYR
ENRKTLSGDLMVLGIQSAIGVNEVNAALGAICATPTAGASGTIPGVLFSIKDTLQLSHEDMIHFLFTSALFGTIVANNAC
ISGAYGGCQAEIGSASAMAAAAAVEAAGGTPQQSSEAFSIALQNLLGLVCDPVAGLVEIPCVKRNAIGTANALAAGDIAL
AGVNNIINADEVIEAMYRIGRQMPRELRETGLGGIAATPTGIAIKNKIFGEKQSNQ

Specific function: Deaminates Also Threonine, Particularly When It Is Present In High Concentration. [C]

COG id: COG1760

COG function: function code E; L-serine deaminase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron-sulfur dependent L-serine dehydratase family [H]

Homologues:

Organism=Escherichia coli, GI1788116, Length=281, Percent_Identity=34.5195729537367, Blast_Score=142, Evalue=3e-35,
Organism=Escherichia coli, GI1789161, Length=245, Percent_Identity=36.3265306122449, Blast_Score=135, Evalue=4e-33,
Organism=Escherichia coli, GI48994925, Length=261, Percent_Identity=35.2490421455939, Blast_Score=135, Evalue=5e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005130
- InterPro:   IPR004642 [H]

Pfam domain/function: PF03313 SDH_alpha [H]

EC number: =4.3.1.17 [H]

Molecular weight: Translated: 30844; Mature: 30844

Theoretical pI: Translated: 4.57; Mature: 4.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYMAIKEIVDAANKSQKTIYELAIEQEIEQTKTSYEEVWSKMEQNLATMQNAINKSIEGD
CCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
GVFSPTGLTGGDAVKIKNYRENRKTLSGDLMVLGIQSAIGVNEVNAALGAICATPTAGAS
CCCCCCCCCCCCEEEECCHHHHHHHCCCCEEEEEEHHHCCHHHHHHHHHHHHCCCCCCCC
GTIPGVLFSIKDTLQLSHEDMIHFLFTSALFGTIVANNACISGAYGGCQAEIGSASAMAA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHCCCCHHHHHH
AAAVEAAGGTPQQSSEAFSIALQNLLGLVCDPVAGLVEIPCVKRNAIGTANALAAGDIAL
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCHH
AGVNNIINADEVIEAMYRIGRQMPRELRETGLGGIAATPTGIAIKNKIFGEKQSNQ
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCEEHHHHCCCCCCCC
>Mature Secondary Structure
MYMAIKEIVDAANKSQKTIYELAIEQEIEQTKTSYEEVWSKMEQNLATMQNAINKSIEGD
CCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
GVFSPTGLTGGDAVKIKNYRENRKTLSGDLMVLGIQSAIGVNEVNAALGAICATPTAGAS
CCCCCCCCCCCCEEEECCHHHHHHHCCCCEEEEEEHHHCCHHHHHHHHHHHHCCCCCCCC
GTIPGVLFSIKDTLQLSHEDMIHFLFTSALFGTIVANNACISGAYGGCQAEIGSASAMAA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHCCCCHHHHHH
AAAVEAAGGTPQQSSEAFSIALQNLLGLVCDPVAGLVEIPCVKRNAIGTANALAAGDIAL
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCHH
AGVNNIINADEVIEAMYRIGRQMPRELRETGLGGIAATPTGIAIKNKIFGEKQSNQ
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCEEHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9534248; 9384377 [H]