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The map label for this gene is xylR [H]

Identifier: 227813821

GI number: 227813821

Start: 1112088

End: 1113116

Strand: Direct

Name: xylR [H]

Synonym: BAMEG_1226

Alternate gene names: 227813821

Gene position: 1112088-1113116 (Clockwise)

Preceding gene: 227813820

Following gene: 227813822

Centisome position: 21.26

GC content: 33.43

Gene sequence:

>1029_bases
TTGAGTGAACAGTTTGTTACTCAAAAATCGATTAAAGAGACAATCCTTCGCGGCATTCGTAAAGTTCTTTTAGAGCGAGG
TAGTGCAACGAAAGTTGAGCTTAGTAATACATTAGAAATCAGTTTTCCAACGATAAGTAAATTTATAGAAAAAATGAAAC
AAGATGGTGAAGTCACTTTAGCTGGTTTAGATGATTCAAGTGGTGGAAGAAGAGCGAAACGATATGAATATAATCCAGAA
TATATGTTAGGTTTAGCAATATTTTTAGAAAAAAATGAGACGAACTATACAATTTTTAACTGTTTAGGGGAAGTAAAAGA
ACAGGGGAGTACTTCAAGTATGTTAATTGATACGGGCGTAAATGTATTATCTAAACATATTGAAGGTCTTATCGCTACAT
TCCCGAAAATAAGCTCTATATCAATTGGTGTGCCTGGTTCGGTTGATAATGGTCGTATTTTTTATATTCCTGGATATGAA
AAGTTCCAAAATTTTAATTTGAAAAGTCATTTGGAGGAACAGTTTTCTATACCAGTAGTAATCGAAAACGATATGAATGC
CGCAGTGCTTGGTTATTATAAAAACACTGGAAACTATGATAATTCCTCTCTTGTATATTTGTATTCAGGTCAAAATGGAC
CAGGTGCGGGGATTATGGTAAATGGAGACGTCGTACGAGGGAGTACGTTTTTCTCAGGAGAGATATCTTTCGTTCCGCAG
TATGATAATAAAAATTTCTTACAAGCTTTGAGAAATGAAGATTCGAATAATCCAGAGGAATATAATATAGATGCTATTAC
TCGTTTAATCGCTACATGTATAGCTATTATTAACCCTCATGCCTTTATCTTCTGTGATGATGAAGTGAATCAATTTGTTA
TAGAGCAAATTGTAAAAACTTGTCCGCAGTACATTCCGGCGGAACATATTCCGAAAATAACAGTGAGTAATTGGAAAGAA
GATTATTTATATGGATTAAAAAGTCTAGGACTTGATCTTATGATTACGAGAACGAATAAAGAAAATTAA

Upstream 100 bases:

>100_bases
ATATATCATCTCTATTGCTTTAGAAAACGATGTATGATATATTGTCAACGCAACTTATTAAAAGTGTTTAATAAGTATGT
TGATTAAGGTGGTGAGCGAT

Downstream 100 bases:

>100_bases
ATGTACTGGCAATGAAGCATTCAATTGTTAGTTGAATAACATAAAAGAAAAGGTGTCGATTATGAAAATTGAACATGTAG
CAATTTGGGTGAATGATTTA

Product: ROK family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 342; Mature: 341

Protein sequence:

>342_residues
MSEQFVTQKSIKETILRGIRKVLLERGSATKVELSNTLEISFPTISKFIEKMKQDGEVTLAGLDDSSGGRRAKRYEYNPE
YMLGLAIFLEKNETNYTIFNCLGEVKEQGSTSSMLIDTGVNVLSKHIEGLIATFPKISSISIGVPGSVDNGRIFYIPGYE
KFQNFNLKSHLEEQFSIPVVIENDMNAAVLGYYKNTGNYDNSSLVYLYSGQNGPGAGIMVNGDVVRGSTFFSGEISFVPQ
YDNKNFLQALRNEDSNNPEEYNIDAITRLIATCIAIINPHAFIFCDDEVNQFVIEQIVKTCPQYIPAEHIPKITVSNWKE
DYLYGLKSLGLDLMITRTNKEN

Sequences:

>Translated_342_residues
MSEQFVTQKSIKETILRGIRKVLLERGSATKVELSNTLEISFPTISKFIEKMKQDGEVTLAGLDDSSGGRRAKRYEYNPE
YMLGLAIFLEKNETNYTIFNCLGEVKEQGSTSSMLIDTGVNVLSKHIEGLIATFPKISSISIGVPGSVDNGRIFYIPGYE
KFQNFNLKSHLEEQFSIPVVIENDMNAAVLGYYKNTGNYDNSSLVYLYSGQNGPGAGIMVNGDVVRGSTFFSGEISFVPQ
YDNKNFLQALRNEDSNNPEEYNIDAITRLIATCIAIINPHAFIFCDDEVNQFVIEQIVKTCPQYIPAEHIPKITVSNWKE
DYLYGLKSLGLDLMITRTNKEN
>Mature_341_residues
SEQFVTQKSIKETILRGIRKVLLERGSATKVELSNTLEISFPTISKFIEKMKQDGEVTLAGLDDSSGGRRAKRYEYNPEY
MLGLAIFLEKNETNYTIFNCLGEVKEQGSTSSMLIDTGVNVLSKHIEGLIATFPKISSISIGVPGSVDNGRIFYIPGYEK
FQNFNLKSHLEEQFSIPVVIENDMNAAVLGYYKNTGNYDNSSLVYLYSGQNGPGAGIMVNGDVVRGSTFFSGEISFVPQY
DNKNFLQALRNEDSNNPEEYNIDAITRLIATCIAIINPHAFIFCDDEVNQFVIEQIVKTCPQYIPAEHIPKITVSNWKED
YLYGLKSLGLDLMITRTNKEN

Specific function: Transcriptional repressor of xylose-utilizing enzymes [H]

COG id: COG1940

COG function: function code KG; Transcriptional regulator/sugar kinase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ROK (nagC/xylR) family [H]

Homologues:

Organism=Escherichia coli, GI1786891, Length=231, Percent_Identity=21.6450216450216, Blast_Score=68, Evalue=8e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR000600
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR; PF00480 ROK [H]

EC number: NA

Molecular weight: Translated: 38322; Mature: 38191

Theoretical pI: Translated: 4.81; Mature: 4.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEQFVTQKSIKETILRGIRKVLLERGSATKVELSNTLEISFPTISKFIEKMKQDGEVTL
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCEEEEECHHHHHHHHHHHCCCCEEE
AGLDDSSGGRRAKRYEYNPEYMLGLAIFLEKNETNYTIFNCLGEVKEQGSTSSMLIDTGV
EECCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEHHHHHHHHHHCCCCCEEEEHHHH
NVLSKHIEGLIATFPKISSISIGVPGSVDNGRIFYIPGYEKFQNFNLKSHLEEQFSIPVV
HHHHHHHHHHHHHCCCCCEEEECCCCCCCCCEEEEECCHHHHHCCCHHHHHHHHCCCCEE
IENDMNAAVLGYYKNTGNYDNSSLVYLYSGQNGPGAGIMVNGDVVRGSTFFSGEISFVPQ
EECCCCEEEEEEECCCCCCCCCEEEEEEECCCCCCCEEEEECCEEECCEEECCEEEEEEC
YDNKNFLQALRNEDSNNPEEYNIDAITRLIATCIAIINPHAFIFCDDEVNQFVIEQIVKT
CCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHH
CPQYIPAEHIPKITVSNWKEDYLYGLKSLGLDLMITRTNKEN
CHHHCCHHHCCCCEECCCHHHHHHHHHHCCEEEEEEECCCCC
>Mature Secondary Structure 
SEQFVTQKSIKETILRGIRKVLLERGSATKVELSNTLEISFPTISKFIEKMKQDGEVTL
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCEEEEECHHHHHHHHHHHCCCCEEE
AGLDDSSGGRRAKRYEYNPEYMLGLAIFLEKNETNYTIFNCLGEVKEQGSTSSMLIDTGV
EECCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEHHHHHHHHHHCCCCCEEEEHHHH
NVLSKHIEGLIATFPKISSISIGVPGSVDNGRIFYIPGYEKFQNFNLKSHLEEQFSIPVV
HHHHHHHHHHHHHCCCCCEEEECCCCCCCCCEEEEECCHHHHHCCCHHHHHHHHCCCCEE
IENDMNAAVLGYYKNTGNYDNSSLVYLYSGQNGPGAGIMVNGDVVRGSTFFSGEISFVPQ
EECCCCEEEEEEECCCCCCCCCEEEEEEECCCCCCCEEEEECCEEECCEEECCEEEEEEC
YDNKNFLQALRNEDSNNPEEYNIDAITRLIATCIAIINPHAFIFCDDEVNQFVIEQIVKT
CCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHH
CPQYIPAEHIPKITVSNWKEDYLYGLKSLGLDLMITRTNKEN
CHHHCCHHHCCCCEECCCHHHHHHHHHHCCEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8920183 [H]