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The map label for this gene is yubA [H]

Identifier: 227813813

GI number: 227813813

Start: 1102685

End: 1103806

Strand: Direct

Name: yubA [H]

Synonym: BAMEG_1218

Alternate gene names: 227813813

Gene position: 1102685-1103806 (Clockwise)

Preceding gene: 227813812

Following gene: 227813815

Centisome position: 21.08

GC content: 32.09

Gene sequence:

>1122_bases
TTGGAGAAAATAAATATAAGAAAAAGAGATAAGCTGAAAAAGTTTTTTAGAGAACACAATTATTTAGCAGTGTTACTTGG
GTTTGCACTATTGTTCATTAATATTTTGTTACTAACAAAAATATCATTTGTTTTTACGCCATTTATCGTCTTTTTAAAAA
CAATTTTCTTCCCGGTATTATTAGCGGGCGTACTATTTTACATTTTGCATCCATTCGTTTCACTTTTAGAAAAGAAAGGT
GTTTCAAGAATCGTATCGATAGCCTCGATATACTTAATCGTAATTGGGTTATTTGTGTTTTTAGTTTTAACGGTTATTCC
AATTATTAAAGATCAAATTGATGCATTAATAGATAACTTACCGTATTTCGGTCATGAAATTGAACGAGCAGCACGTAGAT
TCGGAGAAAGTAATTTACTAGGGAAAATTCAGGAGAATTTAAATATTGATGTAGCGAGTATGGTAAAAGACTACACAGTT
GATTTTACGAAGTCGTTATCATCAGTAACTGGTAATGTAACTGGATTTTTAAGCACTGTGACAGAGGTCGTTTTAACGTT
TGTAATGGTTCCGTTTATATTGTTCTATCTTTTAAAAGATGGTGAGCAATTACCGAATCATTTCTTAAAGTTTATTTCAG
AACAAAGACAACCAGCAGCAATGAGAATACTAGATGATATGCATTATGCGATTAGTTCGTATATTAGAGGACAAATTATC
GTTAGCTTATTTATCGGTATTATGCTATTAATTGGTTACCTTATTATCGGTATTAAATATGCGGTACTACTCGCTATTTT
AGCGATGATTGTAAATATCGTTCCGTACGTAGGACCAATTATTGCAATTACACCAGCTTTAATTATTGCGTTTATTGATT
CGCCAGGGATGGTTTTAAAGGTAATTATCGTAATGATGGTCGTACAATTAGCAGAAGGCAAATTTATTTCTCCGCAAGTC
ATGGGGAAAAAGCTAGATATTCACCCGATTACTATCATTTTTATTATTTTAACTGCCGGAAATTTATTTGGAATTATGGG
CATTATTTTAGCAATTCCAGGGTATGCGATCTTAAAAGTGTTAGTTACGCACGGTTATCGATTTGTTAAGTTGAATACGT
AG

Upstream 100 bases:

>100_bases
TATTGTATCATTTGTAGTGAAAGCTGCAAAGAAATAGATATATAGATTATGATGAAAAGCCCTGAATAAGGGCTTTTCAT
CATTCGAAGAGGTGGTTTCG

Downstream 100 bases:

>100_bases
GAAAAAGAGCTAAAACAGTATTATCTGTTTTAGCTCTTTTTTATTAACAATTGATTTGCATATTGGCGTGCCCATTGATC
CGCTTCTAATATAGCATCTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 373; Mature: 373

Protein sequence:

>373_residues
MEKINIRKRDKLKKFFREHNYLAVLLGFALLFINILLLTKISFVFTPFIVFLKTIFFPVLLAGVLFYILHPFVSLLEKKG
VSRIVSIASIYLIVIGLFVFLVLTVIPIIKDQIDALIDNLPYFGHEIERAARRFGESNLLGKIQENLNIDVASMVKDYTV
DFTKSLSSVTGNVTGFLSTVTEVVLTFVMVPFILFYLLKDGEQLPNHFLKFISEQRQPAAMRILDDMHYAISSYIRGQII
VSLFIGIMLLIGYLIIGIKYAVLLAILAMIVNIVPYVGPIIAITPALIIAFIDSPGMVLKVIIVMMVVQLAEGKFISPQV
MGKKLDIHPITIIFIILTAGNLFGIMGIILAIPGYAILKVLVTHGYRFVKLNT

Sequences:

>Translated_373_residues
MEKINIRKRDKLKKFFREHNYLAVLLGFALLFINILLLTKISFVFTPFIVFLKTIFFPVLLAGVLFYILHPFVSLLEKKG
VSRIVSIASIYLIVIGLFVFLVLTVIPIIKDQIDALIDNLPYFGHEIERAARRFGESNLLGKIQENLNIDVASMVKDYTV
DFTKSLSSVTGNVTGFLSTVTEVVLTFVMVPFILFYLLKDGEQLPNHFLKFISEQRQPAAMRILDDMHYAISSYIRGQII
VSLFIGIMLLIGYLIIGIKYAVLLAILAMIVNIVPYVGPIIAITPALIIAFIDSPGMVLKVIIVMMVVQLAEGKFISPQV
MGKKLDIHPITIIFIILTAGNLFGIMGIILAIPGYAILKVLVTHGYRFVKLNT
>Mature_373_residues
MEKINIRKRDKLKKFFREHNYLAVLLGFALLFINILLLTKISFVFTPFIVFLKTIFFPVLLAGVLFYILHPFVSLLEKKG
VSRIVSIASIYLIVIGLFVFLVLTVIPIIKDQIDALIDNLPYFGHEIERAARRFGESNLLGKIQENLNIDVASMVKDYTV
DFTKSLSSVTGNVTGFLSTVTEVVLTFVMVPFILFYLLKDGEQLPNHFLKFISEQRQPAAMRILDDMHYAISSYIRGQII
VSLFIGIMLLIGYLIIGIKYAVLLAILAMIVNIVPYVGPIIAITPALIIAFIDSPGMVLKVIIVMMVVQLAEGKFISPQV
MGKKLDIHPITIIFIILTAGNLFGIMGIILAIPGYAILKVLVTHGYRFVKLNT

Specific function: Unknown

COG id: COG0628

COG function: function code R; Predicted permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0118 (perM) family [H]

Homologues:

Organism=Escherichia coli, GI1788838, Length=327, Percent_Identity=26.2996941896024, Blast_Score=119, Evalue=4e-28,
Organism=Escherichia coli, GI87082271, Length=304, Percent_Identity=24.6710526315789, Blast_Score=86, Evalue=6e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002549 [H]

Pfam domain/function: PF01594 UPF0118 [H]

EC number: NA

Molecular weight: Translated: 41826; Mature: 41826

Theoretical pI: Translated: 10.02; Mature: 10.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKINIRKRDKLKKFFREHNYLAVLLGFALLFINILLLTKISFVFTPFIVFLKTIFFPVL
CCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAGVLFYILHPFVSLLEKKGVSRIVSIASIYLIVIGLFVFLVLTVIPIIKDQIDALIDNL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PYFGHEIERAARRFGESNLLGKIQENLNIDVASMVKDYTVDFTKSLSSVTGNVTGFLSTV
CCCHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TEVVLTFVMVPFILFYLLKDGEQLPNHFLKFISEQRQPAAMRILDDMHYAISSYIRGQII
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
VSLFIGIMLLIGYLIIGIKYAVLLAILAMIVNIVPYVGPIIAITPALIIAFIDSPGMVLK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
VIIVMMVVQLAEGKFISPQVMGKKLDIHPITIIFIILTAGNLFGIMGIILAIPGYAILKV
HHHHHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
LVTHGYRFVKLNT
HHHCCCEEEEECC
>Mature Secondary Structure
MEKINIRKRDKLKKFFREHNYLAVLLGFALLFINILLLTKISFVFTPFIVFLKTIFFPVL
CCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAGVLFYILHPFVSLLEKKGVSRIVSIASIYLIVIGLFVFLVLTVIPIIKDQIDALIDNL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PYFGHEIERAARRFGESNLLGKIQENLNIDVASMVKDYTVDFTKSLSSVTGNVTGFLSTV
CCCHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TEVVLTFVMVPFILFYLLKDGEQLPNHFLKFISEQRQPAAMRILDDMHYAISSYIRGQII
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
VSLFIGIMLLIGYLIIGIKYAVLLAILAMIVNIVPYVGPIIAITPALIIAFIDSPGMVLK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
VIIVMMVVQLAEGKFISPQVMGKKLDIHPITIIFIILTAGNLFGIMGIILAIPGYAILKV
HHHHHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
LVTHGYRFVKLNT
HHHCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]