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The map label for this gene is fliN [H]

Identifier: 227082250

GI number: 227082250

Start: 2215608

End: 2216024

Strand: Reverse

Name: fliN [H]

Synonym: VCM66_2048

Alternate gene names: 227082250

Gene position: 2216024-2215608 (Counterclockwise)

Preceding gene: 227082251

Following gene: 227082249

Centisome position: 76.61

GC content: 50.6

Gene sequence:

>417_bases
TTGAAGATGGCAAAAAGCGAAGATGAAAGACTGGCCGAAGAATGGGCTGCCGCACTGGGGGAAGACCCTAATGCGCCTGA
TATTGATGTGGATGAAATCTTAGCCGCACCACTTGAAGAGCTGAAAAACACGGCGCCCCCAATTACGGATGACGAGCGCC
GTAAGCTCGATACCATTATGGATATTCCGGTGACCATCTCGATGGAAGTCGGGCGCTCTAAAATCAGCATTCGTAACCTG
CTGCAATTGAACCAAGGTTCGGTGGTGGAGTTGGATCGGATTGCCGGTGAGTCACTCGATGTGATGGTTAACGGCACGCT
GATTGCGCATGGCGAAGTGGTGGTGGTGAACGATAAGTTTGGTATCCGCCTCACCGACGTGATAAGTCAAACCGAACGTA
TCAAGAAATTGAGATAG

Upstream 100 bases:

>100_bases
GAGTTTGAAAACGCAGAAGAAGATGAAATCGAATAATCCGTTTTACGACGTCGGGATGATCGCTCGATAGCGGCGGATAA
TGAAAAGAACCAATAGGTAG

Downstream 100 bases:

>100_bases
CCAATGCGAAAATTGGCGGCTCTGTTTCTCATCCCTGTCCCCGGGTTGGCTGCTACCAGCAGCCAACTGGATTTAGCGAC
CACCTTGGGGTCGCTTTTGT

Product: flagellar motor switch protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 138; Mature: 138

Protein sequence:

>138_residues
MKMAKSEDERLAEEWAAALGEDPNAPDIDVDEILAAPLEELKNTAPPITDDERRKLDTIMDIPVTISMEVGRSKISIRNL
LQLNQGSVVELDRIAGESLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKKLR

Sequences:

>Translated_138_residues
MKMAKSEDERLAEEWAAALGEDPNAPDIDVDEILAAPLEELKNTAPPITDDERRKLDTIMDIPVTISMEVGRSKISIRNL
LQLNQGSVVELDRIAGESLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKKLR
>Mature_138_residues
MKMAKSEDERLAEEWAAALGEDPNAPDIDVDEILAAPLEELKNTAPPITDDERRKLDTIMDIPVTISMEVGRSKISIRNL
LQLNQGSVVELDRIAGESLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQTERIKKLR

Specific function: FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the mot

COG id: COG1886

COG function: function code NU; Flagellar motor switch/type III secretory pathway protein

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side (Potential). Bacterial flagellum basal body (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FliN/MopA/SpaO family [H]

Homologues:

Organism=Escherichia coli, GI1788256, Length=82, Percent_Identity=57.3170731707317, Blast_Score=106, Evalue=6e-25,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012826
- InterPro:   IPR001172
- InterPro:   IPR001543 [H]

Pfam domain/function: PF01052 SpoA [H]

EC number: NA

Molecular weight: Translated: 15275; Mature: 15275

Theoretical pI: Translated: 4.32; Mature: 4.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKMAKSEDERLAEEWAAALGEDPNAPDIDVDEILAAPLEELKNTAPPITDDERRKLDTIM
CCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
DIPVTISMEVGRSKISIRNLLQLNQGSVVELDRIAGESLDVMVNGTLIAHGEVVVVNDKF
CCCEEEEECCCCCHHHHHHHHHCCCCCEEEHHHHCCCCEEEEECCEEEECCEEEEEECCC
GIRLTDVISQTERIKKLR
CEEHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKMAKSEDERLAEEWAAALGEDPNAPDIDVDEILAAPLEELKNTAPPITDDERRKLDTIM
CCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
DIPVTISMEVGRSKISIRNLLQLNQGSVVELDRIAGESLDVMVNGTLIAHGEVVVVNDKF
CCCEEEEECCCCCHHHHHHHHHCCCCCEEEHHHHCCCCEEEEECCEEEECCEEEEEECCC
GIRLTDVISQTERIKKLR
CEEHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7622217; 10984043 [H]