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The map label for this gene is ycfM [C]

Identifier: 227082024

GI number: 227082024

Start: 1978465

End: 1979055

Strand: Reverse

Name: ycfM [C]

Synonym: VCM66_1818

Alternate gene names: 227082024

Gene position: 1979055-1978465 (Counterclockwise)

Preceding gene: 227082025

Following gene: 227082023

Centisome position: 68.42

GC content: 45.35

Gene sequence:

>591_bases
ATGAAAAAAAGTGTCATTGCCCTGCTAGGTTTGGCGGTTATCTTAGGGGGATGTTCGAATAAAGTGAGCTACGGTGATGC
GCAAGCGGTAGAAACCGTCAATGTTGACTTTGGTTCGACCGACCTGCAAAAAATTGCTGCAGAAATGGTGGATAGCATGA
TGATGTCAGGCTCGGTTTCTGCCATCACTCGCGATGGTCGCCCGATTGTGTTTGTTGAACGTATTAAGAACAAAACCAGT
GAACATATTGATACCGAATCGATCACGGACACCATAAGCACCAAGATGCTTAATTCAGGCAAGTTCCGTTTCGTCGATAT
GGATCGTGTTGAAGCGGTTCGCGATCAGTTGAACTTCCAGAATAATGACGAACTCGTCAACCAAAGCACAGCGATCCAGT
TTGGTAAGATGGTCGGCGCGCAATACATGCTGTACGGCAATCTATCGAGTATCGTGAAAAACGCGGGTAGTGATAAAGAT
GTCTACTACAAGATGACCATGCGTTTGATGGATCTACAAACAGGTTTAATTGAGTGGGCTGACGAAACCGAAATCCGTAA
GCAACAGTCAAAGAGCTTACTCGGTTTGTAA

Upstream 100 bases:

>100_bases
CCGAACGGTAAGCAGTTTCGCGTCCAGATCCGCGAAAGCGATCAATAAAAAAGCGGTCGAATAAGCGATCGATAAAAATA
CGTTTTTAAAAGGAATCACG

Downstream 100 bases:

>100_bases
TCCACTAGCACAGGGAAGGAGTTGGTTATGGCAAAGATTGCATGGCGAGAAGCAAGCGCACTGGATCCATCGCTGTTGTC
ATTAAATCACTTTTTCTCTG

Product: hypothetical protein

Products: NA

Alternate protein names: Membrane Lipoprotein Lipid Attachment Site

Number of amino acids: Translated: 196; Mature: 196

Protein sequence:

>196_residues
MKKSVIALLGLAVILGGCSNKVSYGDAQAVETVNVDFGSTDLQKIAAEMVDSMMMSGSVSAITRDGRPIVFVERIKNKTS
EHIDTESITDTISTKMLNSGKFRFVDMDRVEAVRDQLNFQNNDELVNQSTAIQFGKMVGAQYMLYGNLSSIVKNAGSDKD
VYYKMTMRLMDLQTGLIEWADETEIRKQQSKSLLGL

Sequences:

>Translated_196_residues
MKKSVIALLGLAVILGGCSNKVSYGDAQAVETVNVDFGSTDLQKIAAEMVDSMMMSGSVSAITRDGRPIVFVERIKNKTS
EHIDTESITDTISTKMLNSGKFRFVDMDRVEAVRDQLNFQNNDELVNQSTAIQFGKMVGAQYMLYGNLSSIVKNAGSDKD
VYYKMTMRLMDLQTGLIEWADETEIRKQQSKSLLGL
>Mature_196_residues
MKKSVIALLGLAVILGGCSNKVSYGDAQAVETVNVDFGSTDLQKIAAEMVDSMMMSGSVSAITRDGRPIVFVERIKNKTS
EHIDTESITDTISTKMLNSGKFRFVDMDRVEAVRDQLNFQNNDELVNQSTAIQFGKMVGAQYMLYGNLSSIVKNAGSDKD
VYYKMTMRLMDLQTGLIEWADETEIRKQQSKSLLGL

Specific function: Unknown

COG id: COG3417

COG function: function code R; Collagen-binding surface adhesin SpaP (antigen I/II family)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787348, Length=141, Percent_Identity=29.0780141843972, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21698; Mature: 21698

Theoretical pI: Translated: 5.05; Mature: 5.05

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
6.1 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
6.1 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKSVIALLGLAVILGGCSNKVSYGDAQAVETVNVDFGSTDLQKIAAEMVDSMMMSGSVS
CCHHHHHHHHHHHHHCCCCCCCCCCCCHHEEEEECCCCCHHHHHHHHHHHHHHHHCCCHH
AITRDGRPIVFVERIKNKTSEHIDTESITDTISTKMLNSGKFRFVDMDRVEAVRDQLNFQ
EEECCCCCEEEHHHHHCHHHHHCCHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHCCC
NNDELVNQSTAIQFGKMVGAQYMLYGNLSSIVKNAGSDKDVYYKMTMRLMDLQTGLIEWA
CCHHHHHHHHHHHHHHHHHHHHEEECCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCC
DETEIRKQQSKSLLGL
CHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKKSVIALLGLAVILGGCSNKVSYGDAQAVETVNVDFGSTDLQKIAAEMVDSMMMSGSVS
CCHHHHHHHHHHHHHCCCCCCCCCCCCHHEEEEECCCCCHHHHHHHHHHHHHHHHCCCHH
AITRDGRPIVFVERIKNKTSEHIDTESITDTISTKMLNSGKFRFVDMDRVEAVRDQLNFQ
EEECCCCCEEEHHHHHCHHHHHCCHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHCCC
NNDELVNQSTAIQFGKMVGAQYMLYGNLSSIVKNAGSDKDVYYKMTMRLMDLQTGLIEWA
CCHHHHHHHHHHHHHHHHHHHHEEECCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCC
DETEIRKQQSKSLLGL
CHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA