Click here to switch to the map view.

The map label for this gene is ybgC [H]

Identifier: 227081969

GI number: 227081969

Start: 1917081

End: 1917548

Strand: Reverse

Name: ybgC [H]

Synonym: VCM66_1763

Alternate gene names: 227081969

Gene position: 1917548-1917081 (Counterclockwise)

Preceding gene: 227081970

Following gene: 227081968

Centisome position: 66.29

GC content: 43.38

Gene sequence:

>468_bases
GTGAGCGAGTTGCGCTATAGTAGCAGCCATTCCTCGGTGTATGAGATTTTTATCAAAACCATGAACACTTTTCATTGGCC
GGTCACGGTGTATTACGAAGATACTGACGCTGGTGGAGTGGTTTATCACGCAAATTATCTAAAATTCTTCGAAAGAGCCC
GTACCGAAATGCTCCGTGCTGTTGGTGTTCATCAACAGAGTTTGTTGGAACAAGGTATTGGCTTTGTGGTCAGACACATG
GAGATCGATTTTCTTAAAGGCGCTAAGTTAGATGACCATTTGGAAGTCGTGACCAGAGTGTCAGAATTAAAAAAAGCTTC
TTTAACCTTCTGTCAGGAACTCGTTAATCCTGAAGGCACTGTGTTGTCTAAAGCCAAGGTTAAGGTAGCATGTATCGACA
ATGAGAGCATGAGGCCGAGAGCTTTGCCTCAATTAATCAGTTTGGAGTTAAACTGCAGTGACTGCTGA

Upstream 100 bases:

>100_bases
GTATTGTTGATGAGTTTTTATGCAGATTAGCGCTGTCATTTTGAGACAGCGCTAATTTTTTATCATTAGGTAAGAAAACA
TTGCACGGGCTTGTACTATC

Downstream 100 bases:

>100_bases
TATTTCATTTCTTGACCTTTTTTTACAAGCTAGCTTCCTAGTAAAAATGGTAATGCTGACCCTTTTGGGAATGTCGGTTG
CCTCGTGGGCGGCAATTATC

Product: hypothetical protein

Products: NA

Alternate protein names: Acyl-CoA thioesterase [H]

Number of amino acids: Translated: 155; Mature: 154

Protein sequence:

>155_residues
MSELRYSSSHSSVYEIFIKTMNTFHWPVTVYYEDTDAGGVVYHANYLKFFERARTEMLRAVGVHQQSLLEQGIGFVVRHM
EIDFLKGAKLDDHLEVVTRVSELKKASLTFCQELVNPEGTVLSKAKVKVACIDNESMRPRALPQLISLELNCSDC

Sequences:

>Translated_155_residues
MSELRYSSSHSSVYEIFIKTMNTFHWPVTVYYEDTDAGGVVYHANYLKFFERARTEMLRAVGVHQQSLLEQGIGFVVRHM
EIDFLKGAKLDDHLEVVTRVSELKKASLTFCQELVNPEGTVLSKAKVKVACIDNESMRPRALPQLISLELNCSDC
>Mature_154_residues
SELRYSSSHSSVYEIFIKTMNTFHWPVTVYYEDTDAGGVVYHANYLKFFERARTEMLRAVGVHQQSLLEQGIGFVVRHME
IDFLKGAKLDDHLEVVTRVSELKKASLTFCQELVNPEGTVLSKAKVKVACIDNESMRPRALPQLISLELNCSDC

Specific function: Thioesterase that appears to be involved in phospholipid metabolism. Some specific acyl-ACPs could be physiological substrates. Displays acyl-CoA thioesterase activity on malonyl-CoA in vitro, catalyzing the hydrolysis of the thioester bond [H]

COG id: COG0824

COG function: function code R; Predicted thioesterase

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 4-hydroxybenzoyl-CoA thioesterase family [H]

Homologues:

Organism=Escherichia coli, GI1786957, Length=133, Percent_Identity=52.6315789473684, Blast_Score=150, Evalue=5e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006684
- InterPro:   IPR008272
- InterPro:   IPR006683
- InterPro:   IPR014166 [H]

Pfam domain/function: PF03061 4HBT [H]

EC number: NA

Molecular weight: Translated: 17647; Mature: 17516

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSELRYSSSHSSVYEIFIKTMNTFHWPVTVYYEDTDAGGVVYHANYLKFFERARTEMLRA
CCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCEEEEHHHHHHHHHHHHHHHHH
VGVHQQSLLEQGIGFVVRHMEIDFLKGAKLDDHLEVVTRVSELKKASLTFCQELVNPEGT
HCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
VLSKAKVKVACIDNESMRPRALPQLISLELNCSDC
EEECCEEEEEEECCCCCCCHHCHHHHEEECCCCCC
>Mature Secondary Structure 
SELRYSSSHSSVYEIFIKTMNTFHWPVTVYYEDTDAGGVVYHANYLKFFERARTEMLRA
CCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCEEEEHHHHHHHHHHHHHHHHH
VGVHQQSLLEQGIGFVVRHMEIDFLKGAKLDDHLEVVTRVSELKKASLTFCQELVNPEGT
HCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
VLSKAKVKVACIDNESMRPRALPQLISLELNCSDC
EEECCEEEEEEECCCCCCCHHCHHHHEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]