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The map label for this gene is ypdD [C]

Identifier: 227081953

GI number: 227081953

Start: 1901808

End: 1902587

Strand: Direct

Name: ypdD [C]

Synonym: VCM66_1747

Alternate gene names: 227081953

Gene position: 1901808-1902587 (Clockwise)

Preceding gene: 227081952

Following gene: 227081955

Centisome position: 65.75

GC content: 47.69

Gene sequence:

>780_bases
ATGATGCATGAATTCCAAGTCACCTTCTTGGTGAATGATGTGAATGCCAGCGTCCATGTTGCCCAACCGCTGTCTCGCGT
TGCGCGTAAGTTCAAAAGCACCCTGCATATCATCAACATCACCAGAAACCGCAGTGCTGAACTCACCAAATCTCTCGCGG
TATTGCAGGTGGGATTACAAGAAGGTGATTTATGCCAAATCACCGCCATCGGTATTGATGCTGAACTCGCCTGTTTCGTG
ATTAAAGACATGCTTTCTGCGCATTACACTGTCGTGGGCTCCAAAATCAACTATGAGTTCTCTAGCCTGCTCGCCGAACG
CCTGCCACAAATATGCCCGCCGAGTGAGGTCAAATGGCACTATGCCAAAGCCCACACTGAACTCACCAAATTTGAGTGTT
TGAAAGGGTTAGCGCAACTGATCTACCCCGTTTCACCCGATGAGTTGATTTTGGCTTTTATCAAACGTGAAGAACGCTCT
TCCACCTGCGTAGCTCCTGGGATTGCTATTCCCCATGTGATGTTTGCAGACATAGAACACATTGCGGTTGCCGTTATTAA
GAATGATGAGGCGATGGATTGGGCCTCTCAAATGGGAGAGGTGCATTTAGCGATTGCTTTGGTGATGCCGAGTAAGCCCA
ATCGAGATCAAATCATTACCGCAACCAACCTGACCCGAAATTTACTGTGCGATCAAATGGTAGAACGTTTACTACTGACA
CGCAGCGGCGTTGATTTACAAGCTCTACTGATGTACGCGATGTCACGCCTGTTAAATTGA

Upstream 100 bases:

>100_bases
CTGCACGATTTGAAGGGATGAAGGTGGTGAAGCTCTCGATCGAAGAAGTGCTACTCAATGTCGATAAAGTCTTTCTCGTC
CACTGTCGCTGATCCTTGGC

Downstream 100 bases:

>100_bases
AGCACGATAATCCGTTGGTGTACGGCCTGTACGATTTTTGAAAACGCGGCAGAAGTAATTCACATCTTTAAACCCACAAC
GTAGCGACACTTCATTGAGC

Product: putative PTS system, nitrogen regulatory IIA component

Products: protein histidine; sugar phosphate

Alternate protein names: PTS System Fructose-Specific IIA Component; Fructocific Permease; PTS System IIA Component

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MMHEFQVTFLVNDVNASVHVAQPLSRVARKFKSTLHIINITRNRSAELTKSLAVLQVGLQEGDLCQITAIGIDAELACFV
IKDMLSAHYTVVGSKINYEFSSLLAERLPQICPPSEVKWHYAKAHTELTKFECLKGLAQLIYPVSPDELILAFIKREERS
STCVAPGIAIPHVMFADIEHIAVAVIKNDEAMDWASQMGEVHLAIALVMPSKPNRDQIITATNLTRNLLCDQMVERLLLT
RSGVDLQALLMYAMSRLLN

Sequences:

>Translated_259_residues
MMHEFQVTFLVNDVNASVHVAQPLSRVARKFKSTLHIINITRNRSAELTKSLAVLQVGLQEGDLCQITAIGIDAELACFV
IKDMLSAHYTVVGSKINYEFSSLLAERLPQICPPSEVKWHYAKAHTELTKFECLKGLAQLIYPVSPDELILAFIKREERS
STCVAPGIAIPHVMFADIEHIAVAVIKNDEAMDWASQMGEVHLAIALVMPSKPNRDQIITATNLTRNLLCDQMVERLLLT
RSGVDLQALLMYAMSRLLN
>Mature_259_residues
MMHEFQVTFLVNDVNASVHVAQPLSRVARKFKSTLHIINITRNRSAELTKSLAVLQVGLQEGDLCQITAIGIDAELACFV
IKDMLSAHYTVVGSKINYEFSSLLAERLPQICPPSEVKWHYAKAHTELTKFECLKGLAQLIYPVSPDELILAFIKREERS
STCVAPGIAIPHVMFADIEHIAVAVIKNDEAMDWASQMGEVHLAIALVMPSKPNRDQIITATNLTRNLLCDQMVERLLLT
RSGVDLQALLMYAMSRLLN

Specific function: Unknown

COG id: COG1762

COG function: function code GT; Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 2.7.1.69

Molecular weight: Translated: 28880; Mature: 28880

Theoretical pI: Translated: 6.78; Mature: 6.78

Prosite motif: PS51094 PTS_EIIA_TYPE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMHEFQVTFLVNDVNASVHVAQPLSRVARKFKSTLHIINITRNRSAELTKSLAVLQVGLQ
CCCEEEEEEEEEECCCCEEHHHHHHHHHHHHHHHEEEEEEECCCCHHHHHHHHHHHHCCC
EGDLCQITAIGIDAELACFVIKDMLSAHYTVVGSKINYEFSSLLAERLPQICPPSEVKWH
CCCEEEEEEECCCHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHCCCCCCCCCCEEH
YAKAHTELTKFECLKGLAQLIYPVSPDELILAFIKREERSSTCVAPGIAIPHVMFADIEH
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
IAVAVIKNDEAMDWASQMGEVHLAIALVMPSKPNRDQIITATNLTRNLLCDQMVERLLLT
EEEEEEECCCHHHHHHHHCCEEEEEEEEECCCCCCCCEEEEHHHHHHHHHHHHHHHHHHH
RSGVDLQALLMYAMSRLLN
CCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MMHEFQVTFLVNDVNASVHVAQPLSRVARKFKSTLHIINITRNRSAELTKSLAVLQVGLQ
CCCEEEEEEEEEECCCCEEHHHHHHHHHHHHHHHEEEEEEECCCCHHHHHHHHHHHHCCC
EGDLCQITAIGIDAELACFVIKDMLSAHYTVVGSKINYEFSSLLAERLPQICPPSEVKWH
CCCEEEEEEECCCHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHCCCCCCCCCCEEH
YAKAHTELTKFECLKGLAQLIYPVSPDELILAFIKREERSSTCVAPGIAIPHVMFADIEH
HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
IAVAVIKNDEAMDWASQMGEVHLAIALVMPSKPNRDQIITATNLTRNLLCDQMVERLLLT
EEEEEEECCCHHHHHHHHCCEEEEEEEEECCCCCCCCEEEEHHHHHHHHHHHHHHHHHHH
RSGVDLQALLMYAMSRLLN
CCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: protein N(pi)-phosphohistidine; sugar

Specific reaction: protein N(pi)-phosphohistidine + sugar = protein histidine + sugar phosphate

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA