Click here to switch to the map view.

The map label for this gene is 227081940

Identifier: 227081940

GI number: 227081940

Start: 1890046

End: 1890519

Strand: Reverse

Name: 227081940

Synonym: VCM66_1734

Alternate gene names: NA

Gene position: 1890519-1890046 (Counterclockwise)

Preceding gene: 227081941

Following gene: 227081938

Centisome position: 65.36

GC content: 47.05

Gene sequence:

>474_bases
ATGGAAAAAATTGCCATTTTGGTGGATGTACAAAACGTGTATTACACCTGCCGCGAGCAATATGGCCGGCACTTTGATTA
CAATCAGTTTTGGTCGCAAGTGACGCAAAATCGCACGGTAGTGAAAGCCAATGCCTATGCGATTGCCAGTAAAGATCCGC
AGCAGAGGCAATTTCATCATATTTTACGAGGGATTGGCTTTGAGGTGATGCTAAAACCTTTTATCCAGCGCAGTGATGGT
AGCGCGAAAGGGGATTGGGATGTCGGGATTGCCCTTGATGGCTATGAATTAGCTCAGGAGGTAGACACCGTGGTGCTCGT
TTCTGGGGATGGTGATTTTGAACCTTTGGTGACCAGAATTGCGCAACGCTTTCAGGTTAAGGTGGAAGTGTATGGCGTGC
CGAAACTGACCGCGCAACATTTAATCGATGTCGCCAGTCAATTTCACCCGATTGAGCATCGTCTATTACTGTAA

Upstream 100 bases:

>100_bases
TACAGCCCCCTAATCGCTTATATATGAATTGATTTTTAAATAACGGTGTAGAATAAGTGCGGCGTTGAGCCTTGAATCAA
GAATTACTAAGTAGGAATCA

Downstream 100 bases:

>100_bases
TGCGCTATTGCTAAGTGAGGGCTCAGTAGGTTTTGCATCGCTGGTTCCAAGCTCGGGATTCGCTTCTTGTTTTGCCGCGA
GTTTAGCCCGCTCCGCTTTA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 157; Mature: 157

Protein sequence:

>157_residues
MEKIAILVDVQNVYYTCREQYGRHFDYNQFWSQVTQNRTVVKANAYAIASKDPQQRQFHHILRGIGFEVMLKPFIQRSDG
SAKGDWDVGIALDGYELAQEVDTVVLVSGDGDFEPLVTRIAQRFQVKVEVYGVPKLTAQHLIDVASQFHPIEHRLLL

Sequences:

>Translated_157_residues
MEKIAILVDVQNVYYTCREQYGRHFDYNQFWSQVTQNRTVVKANAYAIASKDPQQRQFHHILRGIGFEVMLKPFIQRSDG
SAKGDWDVGIALDGYELAQEVDTVVLVSGDGDFEPLVTRIAQRFQVKVEVYGVPKLTAQHLIDVASQFHPIEHRLLL
>Mature_157_residues
MEKIAILVDVQNVYYTCREQYGRHFDYNQFWSQVTQNRTVVKANAYAIASKDPQQRQFHHILRGIGFEVMLKPFIQRSDG
SAKGDWDVGIALDGYELAQEVDTVVLVSGDGDFEPLVTRIAQRFQVKVEVYGVPKLTAQHLIDVASQFHPIEHRLLL

Specific function: Unknown

COG id: COG1432

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17992; Mature: 17992

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKIAILVDVQNVYYTCREQYGRHFDYNQFWSQVTQNRTVVKANAYAIASKDPQQRQFHH
CCEEEEEEEHHHHHHHHHHHCCCCCCHHHHHHHHHCCCEEEEECEEEEECCCHHHHHHHH
ILRGIGFEVMLKPFIQRSDGSAKGDWDVGIALDGYELAQEVDTVVLVSGDGDFEPLVTRI
HHHHCCHHHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHHCCEEEEEECCCCHHHHHHHH
AQRFQVKVEVYGVPKLTAQHLIDVASQFHPIEHRLLL
HHHHEEEEEEECCCCHHHHHHHHHHHHCCCCHHEECC
>Mature Secondary Structure
MEKIAILVDVQNVYYTCREQYGRHFDYNQFWSQVTQNRTVVKANAYAIASKDPQQRQFHH
CCEEEEEEEHHHHHHHHHHHCCCCCCHHHHHHHHHCCCEEEEECEEEEECCCHHHHHHHH
ILRGIGFEVMLKPFIQRSDGSAKGDWDVGIALDGYELAQEVDTVVLVSGDGDFEPLVTRI
HHHHCCHHHHHHHHHHCCCCCCCCCCEEEEEECHHHHHHHCCEEEEEECCCCHHHHHHHH
AQRFQVKVEVYGVPKLTAQHLIDVASQFHPIEHRLLL
HHHHEEEEEEECCCCHHHHHHHHHHHHCCCCHHEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA