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The map label for this gene is ybiH [C]

Identifier: 227081888

GI number: 227081888

Start: 1824989

End: 1825663

Strand: Reverse

Name: ybiH [C]

Synonym: VCM66_1680

Alternate gene names: 227081888

Gene position: 1825663-1824989 (Counterclockwise)

Preceding gene: 227081892

Following gene: 227081887

Centisome position: 63.12

GC content: 47.7

Gene sequence:

>675_bases
ATGTGGCGAGAGTATATTTCAAACAGTTGTTTGATACGAGTGATTGAAATGGCATTACGCAGTAGTACTAAGGAAAAAAT
ATTGGATGTAGCAGAAGGGCTGTTTGCGGAATACGGCTTCAATGATACCTCTTTGCGCACGATCACCAGTAAAGCGGGGG
TGAACCTTGCGTCGGTCAACTACCATTTTGGTGACAAAAAAACCTTAGTTCGAGCGGTACTCAATCGTTATCTCGAAGCT
TTCATGCCGGAGATGAAACAGTCGCTTGAGCGGCTTAACGAGCGGGACGATTACGATATGGCTGAAGTTTTTGAAGCGCT
ACGTGCTCCCTTGCGTTCGTTAAGCGAATTGCGCCCCAATGGCACCAGCCGTTTTATGCTGCTGATTGGCCGGGGTTATA
CCGATGTGCAGGGCCATCTCCGTTGGTTTATTACCAATCGCTATAATGATGTGCTAACCCTATTTACCGATTCCGTGCTT
AAGGCGAACCCCAACTTGACTCGCGAAACCTTGTTTTGGCGGTTGCATTTCACCTTAGGTACCTGCGTCTTTACCATGGC
GTCGAGTCAAGCGTTGGCAGAGATTGCAGAAAATGATTTTGGAAGCAAAGTTGATCCTAAGTCTGTGGTCGATCAACTGA
TTCCATACCTCGCGGCCGGTGTGGCGGCGAAATAA

Upstream 100 bases:

>100_bases
TAAATTTTTTTGTGGAAGACTTTTCATCGTGCTGCAAGCACTTAGCTGCATCTGGTCAGACCATGGCGAGAAAATGTGAT
GTTAATCGCTTGTTAATCAA

Downstream 100 bases:

>100_bases
CTAACCGATTCATAACAAAAATAACAGTGTAACCAGTGAACAAAAGGATCTGAATATGAGCTCTCTACGCAGAAAATGGA
TCAGCGATCCCGCTTTCAAA

Product: transcriptional regulator, TetR family

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; Regulatory Protein TetR; Transcriptional Regulator PsrA; TetR Family Regulatory Protein; Transcriptional Regulator TetR Family Protein; Regulatory Protein Tetr; Transcription Regulator Protein; PsrA Protein; TetR Family Transcription Factor; TRANSCRIPTIONal REGULATOR TetR Family; Transcriptional Regulator Transcription Regulator Protein; Transcriptional Regulator TetR; TetR/AcrR Family Transcriptional Regulator

Number of amino acids: Translated: 224; Mature: 224

Protein sequence:

>224_residues
MWREYISNSCLIRVIEMALRSSTKEKILDVAEGLFAEYGFNDTSLRTITSKAGVNLASVNYHFGDKKTLVRAVLNRYLEA
FMPEMKQSLERLNERDDYDMAEVFEALRAPLRSLSELRPNGTSRFMLLIGRGYTDVQGHLRWFITNRYNDVLTLFTDSVL
KANPNLTRETLFWRLHFTLGTCVFTMASSQALAEIAENDFGSKVDPKSVVDQLIPYLAAGVAAK

Sequences:

>Translated_224_residues
MWREYISNSCLIRVIEMALRSSTKEKILDVAEGLFAEYGFNDTSLRTITSKAGVNLASVNYHFGDKKTLVRAVLNRYLEA
FMPEMKQSLERLNERDDYDMAEVFEALRAPLRSLSELRPNGTSRFMLLIGRGYTDVQGHLRWFITNRYNDVLTLFTDSVL
KANPNLTRETLFWRLHFTLGTCVFTMASSQALAEIAENDFGSKVDPKSVVDQLIPYLAAGVAAK
>Mature_224_residues
MWREYISNSCLIRVIEMALRSSTKEKILDVAEGLFAEYGFNDTSLRTITSKAGVNLASVNYHFGDKKTLVRAVLNRYLEA
FMPEMKQSLERLNERDDYDMAEVFEALRAPLRSLSELRPNGTSRFMLLIGRGYTDVQGHLRWFITNRYNDVLTLFTDSVL
KANPNLTRETLFWRLHFTLGTCVFTMASSQALAEIAENDFGSKVDPKSVVDQLIPYLAAGVAAK

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25466; Mature: 25466

Theoretical pI: Translated: 7.50; Mature: 7.50

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWREYISNSCLIRVIEMALRSSTKEKILDVAEGLFAEYGFNDTSLRTITSKAGVNLASVN
CCHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCEEEEEE
YHFGDKKTLVRAVLNRYLEAFMPEMKQSLERLNERDDYDMAEVFEALRAPLRSLSELRPN
ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCC
GTSRFMLLIGRGYTDVQGHLRWFITNRYNDVLTLFTDSVLKANPNLTRETLFWRLHFTLG
CCCEEEEEEECCCCCHHHHHHEEEECCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
TCVFTMASSQALAEIAENDFGSKVDPKSVVDQLIPYLAAGVAAK
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MWREYISNSCLIRVIEMALRSSTKEKILDVAEGLFAEYGFNDTSLRTITSKAGVNLASVN
CCHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCEEEEEE
YHFGDKKTLVRAVLNRYLEAFMPEMKQSLERLNERDDYDMAEVFEALRAPLRSLSELRPN
ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCC
GTSRFMLLIGRGYTDVQGHLRWFITNRYNDVLTLFTDSVLKANPNLTRETLFWRLHFTLG
CCCEEEEEEECCCCCHHHHHHEEEECCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
TCVFTMASSQALAEIAENDFGSKVDPKSVVDQLIPYLAAGVAAK
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA