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The map label for this gene is yddU [C]

Identifier: 227081859

GI number: 227081859

Start: 1789943

End: 1792399

Strand: Reverse

Name: yddU [C]

Synonym: VCM66_1650

Alternate gene names: 227081859

Gene position: 1792399-1789943 (Counterclockwise)

Preceding gene: 227081861

Following gene: 227081857

Centisome position: 61.97

GC content: 47.62

Gene sequence:

>2457_bases
ATGAGTGTGAATGTATCAACCGTACAACCACAAAGTATCGGCTTAAAAACTCGTTATGCACCACTCGATTGGTGTTACCA
GTTAGCCAGTCAGCACATGGATTACGATATTGTGATGTGGCAATCACTGGTGGGAAATTCTCGCTCGATTACCAAGCCCG
ACGATTTTCTTGAGTACTTGCCTTTGACTCAGCGCGAGCATGCCGCGGGCTTTTTCGTGCAAGCAGATTTGGCGCCACAG
AGTCTCAATACCTTATTGGTGAGCGCCGAAAAGCTGGTGGCCTTAGTCGCGTTTTCGGTTGACGAAGTGAGTAGCCAGCT
TGTTCGAGGGACGATTACGCCATTACTGATTTTCCATTCTGGTATGGAATCCGCCTTTGCCTTTGATGCTTTATTTGATA
ATGACCATCATGGAGTTGTGATTACCGATGATCAAACGCGAATTTTGGCGTGCAATCGTTATTTTGAGCAGCAAACGGGA
TATCAACAAAATGAGCTACTGGGGTTAAAAACCAGTATGTTCAATTCGGGCAAACATTCGCAGCATTTCTATGTGGATAT
GTGGCAGCAATTGCGTGAGCAAGGCGGCTGGAGCGGCACGATTTTATCTCAGCGCGCTTCTGGTGAAGTCTGGCCACAAG
ACCTATCTATTAAACGTTTAAGTCCTCAGAAAGGACAGATCTTTTATATCGGCTTTACCACGGATCTGGCACCGCATTTG
GATCGCGTACTGGATAAGCAAGCGGGCGATGTCGAATTGCTGACACAATTACCGACGCTGTCTAAATTCAGTGATCAGTT
GAAACAGCGTTTACCTAAGCAGCAAACCACCACTGGATTTGTGTTGGCGATACAGCCTAAATTCAGCAGCGATAAATACT
ATGCGCAGATCCGCCGGCTGGCTGCCAGTTTGGCGCAGAACCGGCAAGTGCAACTGTGTGGTTATCACGGTGAAGGGATT
TTTCTGTGTCAGTTGGATGCGGAGAAAAACCTAGAAGCTCAGCCTTTGGTAGGGTTACAGCGCACTTTACGCCAGTTTTT
TATTGAGTTGCGACAACGAGGTGGGCAGGAAGCTCATCAAGCCGTTGCTAAGGGGCGTTTAGGGGTTTCGGTGTTAAATG
TGGATACCGATAAAATAGAGCGCCTCGTTCCCCATGCCATCCAAGCCATGTTGGAGCACCACGCGGGGGAAACTCGACAT
ATCAACTTTTATGATCGCGCAATCCATCAGCAGATTGAGCGTCGTAAAACACTGGAAAAATGGGTGCAGAAATGGATAGC
AAATGGCGATGTCGAAGTGTTTTATCAGCCCATTGTGGATAGCCAGAGTTGGTCTGTGGTGAAGTTTGAGGCGCTGTGCC
GTTTTCAAGCTCCTGAGCTTTTACATGCATCAACGCAAGAGTTAATTTCGATAGCCGAAGATCTGGGGCTGATCAATCAG
TTGGATGAGTTGATTGGCGGTAAAGCCTTAAAGGATCTGCCTAAAATTCACGCTTTATTTGGTCACCATGTGGGAGTCAG
CATCAATCGTTCGTTAAACAGCGACTTGAGTGCTGAGCAGATTTTACAAAGCGTGGTTGACATGCTCGCTGAAACGCCGA
CTTTGGCGAAAAATATCACGGTGGAGTTAACGGAAACGGCTTACTTTGACTCTCAATCACAGGGAGGCGAAGTGCTGCAG
CATTTACGAAATCGTGGAGTCACTGTTGCGATTGATGATTTTGGAACGGGCTTTTCTTCGTTCTCTTACCTCACGGAGTG
TCAGTTTGATTATTTGAAAATCGATAGAGAGTTTGTGACCAATATCGAAGTGGGGTCACGCCGCTACGCCATCGTAAAAA
TGGTGACCGATCTTGCCCATACTTTGGGTGTTAAGGTTGTCGCCGAAGGAGTAGAGACTGAACATGAAGTGTATGTCCTC
AAGTCGCTGGGGGTAGATCTATTACAGGGATTCTTTTTCGCCAAGCCTTTGCCACTGAGTAACCTTATTCATGCCTCGGA
TTATCGTAAACATCTTAAGCTGACCAACCGTGAATCCGATAAGCAATCACGCGAAATTACAACACTGCAAAGTTTAGCGA
TTTTCACTCAATATCGGCTCGACCCCGGAGATCCACTCTCGTTGGCGGTGGAATACTTTAACGCGGTGCAGTCCGATGTT
TTACCGGTTGTTACGGCTGGAGAATGTGTCGGCTTGGTGGATAGAGCCGCGCTGAATTTACACCTCACGCCGACGATGGG
CACCGAATTGGAAACGGCACGTGAAGCCGCTATTTGGCGCAAACCCGTCAATCAAATCATGCGCACGCCGCAAGTCAAAC
TGGCTCATGATACAGACCTCAAGCTATTAGCCTCGTTGCTCAAAACTAATCCACCGCCACCTTGGGTTTTAGTCGAGGGT
AATAAATACAAAGGGATTGTGACTGCGCCGCGTCTGCTCGCTTATTTAGCGAGTTGA

Upstream 100 bases:

>100_bases
TTAGGGATAAGTTAACGTTATGCGTCAGAGTTCATTGTATGGGGTGACAAGCTGTTCTAAGGTGGTCACAGAATCAACAT
CATCAGTTTAGGGATACCGG

Downstream 100 bases:

>100_bases
TACAGTCAGCAAGGCTGAGAGGAAATATCGGTTCTCCAAAACGCCACTCATAAAAAAGCCCGCTTGGCGGGCTTGGTTTA
GGTTGAATAATGAGTGTTGT

Product: PAS/EAL family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 818; Mature: 817

Protein sequence:

>818_residues
MSVNVSTVQPQSIGLKTRYAPLDWCYQLASQHMDYDIVMWQSLVGNSRSITKPDDFLEYLPLTQREHAAGFFVQADLAPQ
SLNTLLVSAEKLVALVAFSVDEVSSQLVRGTITPLLIFHSGMESAFAFDALFDNDHHGVVITDDQTRILACNRYFEQQTG
YQQNELLGLKTSMFNSGKHSQHFYVDMWQQLREQGGWSGTILSQRASGEVWPQDLSIKRLSPQKGQIFYIGFTTDLAPHL
DRVLDKQAGDVELLTQLPTLSKFSDQLKQRLPKQQTTTGFVLAIQPKFSSDKYYAQIRRLAASLAQNRQVQLCGYHGEGI
FLCQLDAEKNLEAQPLVGLQRTLRQFFIELRQRGGQEAHQAVAKGRLGVSVLNVDTDKIERLVPHAIQAMLEHHAGETRH
INFYDRAIHQQIERRKTLEKWVQKWIANGDVEVFYQPIVDSQSWSVVKFEALCRFQAPELLHASTQELISIAEDLGLINQ
LDELIGGKALKDLPKIHALFGHHVGVSINRSLNSDLSAEQILQSVVDMLAETPTLAKNITVELTETAYFDSQSQGGEVLQ
HLRNRGVTVAIDDFGTGFSSFSYLTECQFDYLKIDREFVTNIEVGSRRYAIVKMVTDLAHTLGVKVVAEGVETEHEVYVL
KSLGVDLLQGFFFAKPLPLSNLIHASDYRKHLKLTNRESDKQSREITTLQSLAIFTQYRLDPGDPLSLAVEYFNAVQSDV
LPVVTAGECVGLVDRAALNLHLTPTMGTELETAREAAIWRKPVNQIMRTPQVKLAHDTDLKLLASLLKTNPPPPWVLVEG
NKYKGIVTAPRLLAYLAS

Sequences:

>Translated_818_residues
MSVNVSTVQPQSIGLKTRYAPLDWCYQLASQHMDYDIVMWQSLVGNSRSITKPDDFLEYLPLTQREHAAGFFVQADLAPQ
SLNTLLVSAEKLVALVAFSVDEVSSQLVRGTITPLLIFHSGMESAFAFDALFDNDHHGVVITDDQTRILACNRYFEQQTG
YQQNELLGLKTSMFNSGKHSQHFYVDMWQQLREQGGWSGTILSQRASGEVWPQDLSIKRLSPQKGQIFYIGFTTDLAPHL
DRVLDKQAGDVELLTQLPTLSKFSDQLKQRLPKQQTTTGFVLAIQPKFSSDKYYAQIRRLAASLAQNRQVQLCGYHGEGI
FLCQLDAEKNLEAQPLVGLQRTLRQFFIELRQRGGQEAHQAVAKGRLGVSVLNVDTDKIERLVPHAIQAMLEHHAGETRH
INFYDRAIHQQIERRKTLEKWVQKWIANGDVEVFYQPIVDSQSWSVVKFEALCRFQAPELLHASTQELISIAEDLGLINQ
LDELIGGKALKDLPKIHALFGHHVGVSINRSLNSDLSAEQILQSVVDMLAETPTLAKNITVELTETAYFDSQSQGGEVLQ
HLRNRGVTVAIDDFGTGFSSFSYLTECQFDYLKIDREFVTNIEVGSRRYAIVKMVTDLAHTLGVKVVAEGVETEHEVYVL
KSLGVDLLQGFFFAKPLPLSNLIHASDYRKHLKLTNRESDKQSREITTLQSLAIFTQYRLDPGDPLSLAVEYFNAVQSDV
LPVVTAGECVGLVDRAALNLHLTPTMGTELETAREAAIWRKPVNQIMRTPQVKLAHDTDLKLLASLLKTNPPPPWVLVEG
NKYKGIVTAPRLLAYLAS
>Mature_817_residues
SVNVSTVQPQSIGLKTRYAPLDWCYQLASQHMDYDIVMWQSLVGNSRSITKPDDFLEYLPLTQREHAAGFFVQADLAPQS
LNTLLVSAEKLVALVAFSVDEVSSQLVRGTITPLLIFHSGMESAFAFDALFDNDHHGVVITDDQTRILACNRYFEQQTGY
QQNELLGLKTSMFNSGKHSQHFYVDMWQQLREQGGWSGTILSQRASGEVWPQDLSIKRLSPQKGQIFYIGFTTDLAPHLD
RVLDKQAGDVELLTQLPTLSKFSDQLKQRLPKQQTTTGFVLAIQPKFSSDKYYAQIRRLAASLAQNRQVQLCGYHGEGIF
LCQLDAEKNLEAQPLVGLQRTLRQFFIELRQRGGQEAHQAVAKGRLGVSVLNVDTDKIERLVPHAIQAMLEHHAGETRHI
NFYDRAIHQQIERRKTLEKWVQKWIANGDVEVFYQPIVDSQSWSVVKFEALCRFQAPELLHASTQELISIAEDLGLINQL
DELIGGKALKDLPKIHALFGHHVGVSINRSLNSDLSAEQILQSVVDMLAETPTLAKNITVELTETAYFDSQSQGGEVLQH
LRNRGVTVAIDDFGTGFSSFSYLTECQFDYLKIDREFVTNIEVGSRRYAIVKMVTDLAHTLGVKVVAEGVETEHEVYVLK
SLGVDLLQGFFFAKPLPLSNLIHASDYRKHLKLTNRESDKQSREITTLQSLAIFTQYRLDPGDPLSLAVEYFNAVQSDVL
PVVTAGECVGLVDRAALNLHLTPTMGTELETAREAAIWRKPVNQIMRTPQVKLAHDTDLKLLASLLKTNPPPPWVLVEGN
KYKGIVTAPRLLAYLAS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=256, Percent_Identity=28.90625, Blast_Score=130, Evalue=2e-31,
Organism=Escherichia coli, GI1790496, Length=237, Percent_Identity=32.9113924050633, Blast_Score=126, Evalue=7e-30,
Organism=Escherichia coli, GI87081845, Length=253, Percent_Identity=28.4584980237154, Blast_Score=118, Evalue=2e-27,
Organism=Escherichia coli, GI1787055, Length=281, Percent_Identity=30.2491103202847, Blast_Score=114, Evalue=2e-26,
Organism=Escherichia coli, GI87081743, Length=247, Percent_Identity=31.9838056680162, Blast_Score=114, Evalue=3e-26,
Organism=Escherichia coli, GI1788502, Length=233, Percent_Identity=31.7596566523605, Blast_Score=113, Evalue=5e-26,
Organism=Escherichia coli, GI1787541, Length=294, Percent_Identity=29.5918367346939, Blast_Score=112, Evalue=6e-26,
Organism=Escherichia coli, GI226510982, Length=302, Percent_Identity=31.1258278145695, Blast_Score=107, Evalue=4e-24,
Organism=Escherichia coli, GI87081980, Length=290, Percent_Identity=28.2758620689655, Blast_Score=104, Evalue=2e-23,
Organism=Escherichia coli, GI1786507, Length=240, Percent_Identity=27.5, Blast_Score=100, Evalue=5e-22,
Organism=Escherichia coli, GI1788849, Length=213, Percent_Identity=33.3333333333333, Blast_Score=98, Evalue=3e-21,
Organism=Escherichia coli, GI87082096, Length=123, Percent_Identity=37.3983739837398, Blast_Score=87, Evalue=6e-18,
Organism=Escherichia coli, GI1787410, Length=222, Percent_Identity=28.3783783783784, Blast_Score=84, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 91833; Mature: 91702

Theoretical pI: Translated: 6.45; Mature: 6.45

Prosite motif: PS50112 PAS ; PS50883 EAL ; PS00430 TONB_DEPENDENT_REC_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVNVSTVQPQSIGLKTRYAPLDWCYQLASQHMDYDIVMWQSLVGNSRSITKPDDFLEYL
CCCCCCCCCCHHCCCEECCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHC
PLTQREHAAGFFVQADLAPQSLNTLLVSAEKLVALVAFSVDEVSSQLVRGTITPLLIFHS
CCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GMESAFAFDALFDNDHHGVVITDDQTRILACNRYFEQQTGYQQNELLGLKTSMFNSGKHS
CCHHHHHHHHHCCCCCCCEEEECCCCEEEEHHHHHHHHCCCCHHHEEEHHHHHHCCCCCC
QHFYVDMWQQLREQGGWSGTILSQRASGEVWPQDLSIKRLSPQKGQIFYIGFTTDLAPHL
CCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCEEECCCCCCEEEEEEECCCHHHHH
DRVLDKQAGDVELLTQLPTLSKFSDQLKQRLPKQQTTTGFVLAIQPKFSSDKYYAQIRRL
HHHHHCCCCCHHHHHHCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHH
AASLAQNRQVQLCGYHGEGIFLCQLDAEKNLEAQPLVGLQRTLRQFFIELRQRGGQEAHQ
HHHHHCCCEEEEEEECCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHH
AVAKGRLGVSVLNVDTDKIERLVPHAIQAMLEHHAGETRHINFYDRAIHQQIERRKTLEK
HHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHH
WVQKWIANGDVEVFYQPIVDSQSWSVVKFEALCRFQAPELLHASTQELISIAEDLGLINQ
HHHHHHCCCCEEEEEEECCCCCCCCEEEHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
LDELIGGKALKDLPKIHALFGHHVGVSINRSLNSDLSAEQILQSVVDMLAETPTLAKNIT
HHHHHCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHHHHHHHCCCCHHCCEE
VELTETAYFDSQSQGGEVLQHLRNRGVTVAIDDFGTGFSSFSYLTECQFDYLKIDREFVT
EEEEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCHHHHHHCHHHHC
NIEVGSRRYAIVKMVTDLAHTLGVKVVAEGVETEHEVYVLKSLGVDLLQGFFFAKPLPLS
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHEEEHHHCCHHHHHHHHHCCCCCHH
NLIHASDYRKHLKLTNRESDKQSREITTLQSLAIFTQYRLDPGDPLSLAVEYFNAVQSDV
HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCC
LPVVTAGECVGLVDRAALNLHLTPTMGTELETAREAAIWRKPVNQIMRTPQVKLAHDTDL
CCEEECCHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCH
KLLASLLKTNPPPPWVLVEGNKYKGIVTAPRLLAYLAS
HHHHHHHHCCCCCCEEEEECCCCCCEEHHHHHHHHHCC
>Mature Secondary Structure 
SVNVSTVQPQSIGLKTRYAPLDWCYQLASQHMDYDIVMWQSLVGNSRSITKPDDFLEYL
CCCCCCCCCHHCCCEECCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHC
PLTQREHAAGFFVQADLAPQSLNTLLVSAEKLVALVAFSVDEVSSQLVRGTITPLLIFHS
CCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GMESAFAFDALFDNDHHGVVITDDQTRILACNRYFEQQTGYQQNELLGLKTSMFNSGKHS
CCHHHHHHHHHCCCCCCCEEEECCCCEEEEHHHHHHHHCCCCHHHEEEHHHHHHCCCCCC
QHFYVDMWQQLREQGGWSGTILSQRASGEVWPQDLSIKRLSPQKGQIFYIGFTTDLAPHL
CCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCEEECCCCCCEEEEEEECCCHHHHH
DRVLDKQAGDVELLTQLPTLSKFSDQLKQRLPKQQTTTGFVLAIQPKFSSDKYYAQIRRL
HHHHHCCCCCHHHHHHCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHH
AASLAQNRQVQLCGYHGEGIFLCQLDAEKNLEAQPLVGLQRTLRQFFIELRQRGGQEAHQ
HHHHHCCCEEEEEEECCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHH
AVAKGRLGVSVLNVDTDKIERLVPHAIQAMLEHHAGETRHINFYDRAIHQQIERRKTLEK
HHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHH
WVQKWIANGDVEVFYQPIVDSQSWSVVKFEALCRFQAPELLHASTQELISIAEDLGLINQ
HHHHHHCCCCEEEEEEECCCCCCCCEEEHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
LDELIGGKALKDLPKIHALFGHHVGVSINRSLNSDLSAEQILQSVVDMLAETPTLAKNIT
HHHHHCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHHHHHHHCCCCHHCCEE
VELTETAYFDSQSQGGEVLQHLRNRGVTVAIDDFGTGFSSFSYLTECQFDYLKIDREFVT
EEEEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCHHHHHHCHHHHC
NIEVGSRRYAIVKMVTDLAHTLGVKVVAEGVETEHEVYVLKSLGVDLLQGFFFAKPLPLS
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHEEEHHHCCHHHHHHHHHCCCCCHH
NLIHASDYRKHLKLTNRESDKQSREITTLQSLAIFTQYRLDPGDPLSLAVEYFNAVQSDV
HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCC
LPVVTAGECVGLVDRAALNLHLTPTMGTELETAREAAIWRKPVNQIMRTPQVKLAHDTDL
CCEEECCHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCH
KLLASLLKTNPPPPWVLVEGNKYKGIVTAPRLLAYLAS
HHHHHHHHCCCCCCEEEEECCCCCCEEHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]