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The map label for this gene is ydcF [C]

Identifier: 227081847

GI number: 227081847

Start: 1778758

End: 1779405

Strand: Direct

Name: ydcF [C]

Synonym: VCM66_1638

Alternate gene names: 227081847

Gene position: 1778758-1779405 (Clockwise)

Preceding gene: 227081846

Following gene: 227081848

Centisome position: 61.5

GC content: 47.07

Gene sequence:

>648_bases
ATGAGTAAACGCTTGTATCAACAGATTGAAACCCTTTGGGATTACTTGCAGTTGCACCAACAACCCAACGTTGCGGATCT
GATTTTGGTGCTCGGCAGTAACGATGTCCGTGTGGCAGAACATGCGGCAAAACTCTACCACCAAGGCCTTGCCCCTTATG
TACTGTTTTCTGGTGGCTTTGGCCGTTTTACTCAAGGGGTATTTAACCACAATGAGGCGGAGACTTTTGCAGCGATCGCC
AAAGATGCTGGTGTCCCTGAACACGCGATTTTGCTTGAGACACAATCGACCAATAGTGGTGAAAATCTACATTTCAGCCA
TCAGCTATTGGTACAACAAGCTCGGCCTGCCAAACGCATCTTACTGGTGCAAAAACCTTATATGGAACGTCGCGCTTATG
CGACATTTATGCAACAGTGGCCAGAATCGGTCGAAAGTGTGCAGGTTACCTCACCCGCAGGCAGTTTTTTTGACTATTTA
ACTTCAGAGCTCACCAGTGATTTTGTGCTCAATGCCATGCTGGGCGATTTTGAACGCATCCGAGATTATCCAGCGCTGGG
TTTTCAAATCACGCAACCTATCCCAGAGCCAGTGATGCAGGCCTATCAAGCCTTGTTGCCATTAAAAGTGAATCTTGAAA
TGTCATGA

Upstream 100 bases:

>100_bases
CCGCTGTGTGATAAAGAGGAGAAACGGATTGTGTGCGACAAATTATTGGCAGCTGGTTACCGTTTTCATTTCTCTCACAC
CTTAGAGGCTGTGCACGGTT

Downstream 100 bases:

>100_bases
TTGTGGCATCGGTTTTGCTTAGCTATTTTTGGGTATAGGTTACTTTTTTAGATAGTGACTTTTTTAGATAGTGACTTTTT
TAGGTAGATGCTACTTTTTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 215; Mature: 214

Protein sequence:

>215_residues
MSKRLYQQIETLWDYLQLHQQPNVADLILVLGSNDVRVAEHAAKLYHQGLAPYVLFSGGFGRFTQGVFNHNEAETFAAIA
KDAGVPEHAILLETQSTNSGENLHFSHQLLVQQARPAKRILLVQKPYMERRAYATFMQQWPESVESVQVTSPAGSFFDYL
TSELTSDFVLNAMLGDFERIRDYPALGFQITQPIPEPVMQAYQALLPLKVNLEMS

Sequences:

>Translated_215_residues
MSKRLYQQIETLWDYLQLHQQPNVADLILVLGSNDVRVAEHAAKLYHQGLAPYVLFSGGFGRFTQGVFNHNEAETFAAIA
KDAGVPEHAILLETQSTNSGENLHFSHQLLVQQARPAKRILLVQKPYMERRAYATFMQQWPESVESVQVTSPAGSFFDYL
TSELTSDFVLNAMLGDFERIRDYPALGFQITQPIPEPVMQAYQALLPLKVNLEMS
>Mature_214_residues
SKRLYQQIETLWDYLQLHQQPNVADLILVLGSNDVRVAEHAAKLYHQGLAPYVLFSGGFGRFTQGVFNHNEAETFAAIAK
DAGVPEHAILLETQSTNSGENLHFSHQLLVQQARPAKRILLVQKPYMERRAYATFMQQWPESVESVQVTSPAGSFFDYLT
SELTSDFVLNAMLGDFERIRDYPALGFQITQPIPEPVMQAYQALLPLKVNLEMS

Specific function: The imp locus inhibits the extrachromosomal maintenance of the streptomyces plasmid SLP1. May function as a transcriptional activator [H]

COG id: COG1434

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ydcF [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003848
- InterPro:   IPR014729 [H]

Pfam domain/function: PF02698 DUF218 [H]

EC number: NA

Molecular weight: Translated: 24315; Mature: 24184

Theoretical pI: Translated: 5.54; Mature: 5.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKRLYQQIETLWDYLQLHQQPNVADLILVLGSNDVRVAEHAAKLYHQGLAPYVLFSGGF
CCHHHHHHHHHHHHHHHHHCCCCHHHEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCH
GRFTQGVFNHNEAETFAAIAKDAGVPEHAILLETQSTNSGENLHFSHQLLVQQARPAKRI
HHHHHHHHCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCEEHHHHHHHHHCCCHHHE
LLVQKPYMERRAYATFMQQWPESVESVQVTSPAGSFFDYLTSELTSDFVLNAMLGDFERI
EEECCCHHHHHHHHHHHHHHHHHHHCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
RDYPALGFQITQPIPEPVMQAYQALLPLKVNLEMS
HCCCCCCEEECCCCCHHHHHHHHHHCCEEEEEECC
>Mature Secondary Structure 
SKRLYQQIETLWDYLQLHQQPNVADLILVLGSNDVRVAEHAAKLYHQGLAPYVLFSGGF
CHHHHHHHHHHHHHHHHHCCCCHHHEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCH
GRFTQGVFNHNEAETFAAIAKDAGVPEHAILLETQSTNSGENLHFSHQLLVQQARPAKRI
HHHHHHHHCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCEEHHHHHHHHHCCCHHHE
LLVQKPYMERRAYATFMQQWPESVESVQVTSPAGSFFDYLTSELTSDFVLNAMLGDFERI
EEECCCHHHHHHHHHHHHHHHHHHHCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
RDYPALGFQITQPIPEPVMQAYQALLPLKVNLEMS
HCCCCCCEEECCCCCHHHHHHHHHHCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2770697; 12000953 [H]