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The map label for this gene is ybhS [H]

Identifier: 227081811

GI number: 227081811

Start: 1740040

End: 1741137

Strand: Direct

Name: ybhS [H]

Synonym: VCM66_1600

Alternate gene names: 227081811

Gene position: 1740040-1741137 (Clockwise)

Preceding gene: 227081810

Following gene: 227081812

Centisome position: 60.16

GC content: 47.54

Gene sequence:

>1098_bases
ATGAACAGCCTGTTTCGCATTAAAGCGGTCTTGGTGAAGGAGTTTCGTCAGTTATCACGCGATCGCATTACTTTTGGCAT
GGTTGTGATGATCCCACTCATTCAACTCTTACTATTTGGTTTTGCGATTAATACCGATGTGCGCAATATACCGATTGGCG
TGGTGGATCAAAGCGACTCCTCATTCAGTCGGTTACTTGTGGAATCCGTCAAAGTCACTCAAGTGATCCGCGTCAAGCAG
CACTATCTCACGGTTAATGAGGCGGAAAAAGCGATTGCCAGTGGTGATATTCGCGCAGCGCTGATCTTGCCGAGCGATCT
GGTCGCACGCAGCCAACAACAACGTGAATTAGGGCAATGGTTGATTGATGGTTCAGATACCATGATCGCAGGCGCGCTGT
TAGGGCTAAAAAATATGCCGCTTACCGATCTTCCAACCCTCGGCATCCAACCTTTAACGCCCACTTTTGAAATCACTTTA
CTTTACAACCCCAGCCGCCGTTCTGCGGTGAATATCGTTCCCGGATTACTCGGGGTTATCTTAACCATGACCATGATCTT
GTTTACCAGTGCAGCAATTGTGCGTGAGCGCGAACGAGGCAATTTGGAGCTTTTGATCACCACTCCTGTCCATTCCATTG
AGTTGATGATAGGAAAAATCGTCCCGTACATTTTTGTTGGTTTGATCCAAGTGGCGATTATTCTTGGTTTAGGGCATTTT
ATTTTTGCCGTTCCGATTAATGGCGCGTTAAGCCAAATTCTCTTCGGCACTTTACTCTTCATTTCTGCCAGTTTGACCTT
GGGTTTAGTCATTTCCACCATCGCCAACACCCAGCTCCAAGCCATGCAGATGACAGTATTTATTCTACTTCCTTCCATTC
TCCTCTCCGGATTCATGTTTCCGTATGAAGGAATGCCTACCGCAGCACAATGGCTCTCTGAACTGCTCCCCGCGACTCAC
TTTATGCGTTTGATCCGTGGCATTGTATTACGTGGGGCAGATTTAGCTGACTTGTGGCGCGATACGCTCTGGCTCGCGCT
CTTTACTCTCTTTGGATTGATGCTGGCTGCGCTGCGCTTTAAAAAATCGCTCGATTAG

Upstream 100 bases:

>100_bases
GGCTTCGCCATACCTTTCCTCAATTGGCCGCCGCAGAATTAACCCTTGCCCGGCCGAGCTTGGAAGATGTCTTTGTTACC
GTCACAGGTAAGGGGCGACA

Downstream 100 bases:

>100_bases
CCCTCTATTGGGGCAAACAGAGTGATAGCACCGAAAAATATGAACGAGATAGCGAAATAGAGCGCAAGAATAGCATTAGA
AAATGTACGGCAAATGACCA

Product: ABC-type multidrug transport system, permease component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 365; Mature: 365

Protein sequence:

>365_residues
MNSLFRIKAVLVKEFRQLSRDRITFGMVVMIPLIQLLLFGFAINTDVRNIPIGVVDQSDSSFSRLLVESVKVTQVIRVKQ
HYLTVNEAEKAIASGDIRAALILPSDLVARSQQQRELGQWLIDGSDTMIAGALLGLKNMPLTDLPTLGIQPLTPTFEITL
LYNPSRRSAVNIVPGLLGVILTMTMILFTSAAIVRERERGNLELLITTPVHSIELMIGKIVPYIFVGLIQVAIILGLGHF
IFAVPINGALSQILFGTLLFISASLTLGLVISTIANTQLQAMQMTVFILLPSILLSGFMFPYEGMPTAAQWLSELLPATH
FMRLIRGIVLRGADLADLWRDTLWLALFTLFGLMLAALRFKKSLD

Sequences:

>Translated_365_residues
MNSLFRIKAVLVKEFRQLSRDRITFGMVVMIPLIQLLLFGFAINTDVRNIPIGVVDQSDSSFSRLLVESVKVTQVIRVKQ
HYLTVNEAEKAIASGDIRAALILPSDLVARSQQQRELGQWLIDGSDTMIAGALLGLKNMPLTDLPTLGIQPLTPTFEITL
LYNPSRRSAVNIVPGLLGVILTMTMILFTSAAIVRERERGNLELLITTPVHSIELMIGKIVPYIFVGLIQVAIILGLGHF
IFAVPINGALSQILFGTLLFISASLTLGLVISTIANTQLQAMQMTVFILLPSILLSGFMFPYEGMPTAAQWLSELLPATH
FMRLIRGIVLRGADLADLWRDTLWLALFTLFGLMLAALRFKKSLD
>Mature_365_residues
MNSLFRIKAVLVKEFRQLSRDRITFGMVVMIPLIQLLLFGFAINTDVRNIPIGVVDQSDSSFSRLLVESVKVTQVIRVKQ
HYLTVNEAEKAIASGDIRAALILPSDLVARSQQQRELGQWLIDGSDTMIAGALLGLKNMPLTDLPTLGIQPLTPTFEITL
LYNPSRRSAVNIVPGLLGVILTMTMILFTSAAIVRERERGNLELLITTPVHSIELMIGKIVPYIFVGLIQVAIILGLGHF
IFAVPINGALSQILFGTLLFISASLTLGLVISTIANTQLQAMQMTVFILLPSILLSGFMFPYEGMPTAAQWLSELLPATH
FMRLIRGIVLRGADLADLWRDTLWLALFTLFGLMLAALRFKKSLD

Specific function: Unknown

COG id: COG0842

COG function: function code V; ABC-type multidrug transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

Organism=Escherichia coli, GI1787011, Length=340, Percent_Identity=29.1176470588235, Blast_Score=152, Evalue=5e-38,
Organism=Escherichia coli, GI48994943, Length=350, Percent_Identity=28, Blast_Score=140, Evalue=1e-34,
Organism=Escherichia coli, GI1787010, Length=351, Percent_Identity=29.0598290598291, Blast_Score=137, Evalue=1e-33,
Organism=Escherichia coli, GI226510979, Length=388, Percent_Identity=25.2577319587629, Blast_Score=90, Evalue=3e-19,
Organism=Drosophila melanogaster, GI24650855, Length=370, Percent_Identity=23.7837837837838, Blast_Score=91, Evalue=1e-18,
Organism=Drosophila melanogaster, GI24650853, Length=370, Percent_Identity=23.7837837837838, Blast_Score=91, Evalue=2e-18,
Organism=Drosophila melanogaster, GI85725260, Length=404, Percent_Identity=20.7920792079208, Blast_Score=76, Evalue=3e-14,
Organism=Drosophila melanogaster, GI85725262, Length=404, Percent_Identity=20.7920792079208, Blast_Score=75, Evalue=6e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 40311; Mature: 40311

Theoretical pI: Translated: 9.99; Mature: 9.99

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSLFRIKAVLVKEFRQLSRDRITFGMVVMIPLIQLLLFGFAINTDVRNIPIGVVDQSDS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCH
SFSRLLVESVKVTQVIRVKQHYLTVNEAEKAIASGDIRAALILPSDLVARSQQQRELGQW
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHH
LIDGSDTMIAGALLGLKNMPLTDLPTLGIQPLTPTFEITLLYNPSRRSAVNIVPGLLGVI
HCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHH
LTMTMILFTSAAIVRERERGNLELLITTPVHSIELMIGKIVPYIFVGLIQVAIILGLGHF
HHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IFAVPINGALSQILFGTLLFISASLTLGLVISTIANTQLQAMQMTVFILLPSILLSGFMF
HEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PYEGMPTAAQWLSELLPATHFMRLIRGIVLRGADLADLWRDTLWLALFTLFGLMLAALRF
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
KKSLD
HHCCC
>Mature Secondary Structure
MNSLFRIKAVLVKEFRQLSRDRITFGMVVMIPLIQLLLFGFAINTDVRNIPIGVVDQSDS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCH
SFSRLLVESVKVTQVIRVKQHYLTVNEAEKAIASGDIRAALILPSDLVARSQQQRELGQW
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHH
LIDGSDTMIAGALLGLKNMPLTDLPTLGIQPLTPTFEITLLYNPSRRSAVNIVPGLLGVI
HCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHH
LTMTMILFTSAAIVRERERGNLELLITTPVHSIELMIGKIVPYIFVGLIQVAIILGLGHF
HHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IFAVPINGALSQILFGTLLFISASLTLGLVISTIANTQLQAMQMTVFILLPSILLSGFMF
HEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PYEGMPTAAQWLSELLPATHFMRLIRGIVLRGADLADLWRDTLWLALFTLFGLMLAALRF
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
KKSLD
HHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]