| Definition | Vibrio cholerae M66-2 chromosome I, complete genome. |
|---|---|
| Accession | NC_012578 |
| Length | 2,892,523 |
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The map label for this gene is perA [H]
Identifier: 227081715
GI number: 227081715
Start: 1618844
End: 1621018
Strand: Direct
Name: perA [H]
Synonym: VCM66_1501
Alternate gene names: 227081715
Gene position: 1618844-1621018 (Clockwise)
Preceding gene: 227081714
Following gene: 227081717
Centisome position: 55.97
GC content: 51.17
Gene sequence:
>2175_bases ATGGAGCACAATAAAGCGGGTTCAAGCGGTCAATGCCCTGTCATGCACGGTGGCTTGACTTCGGCGAGCATGTCCAACAT GGACTGGTGGCCTAAAGCGCTAAACTTAGACATCCTTCATCAGCATGACAGCAAAACCAATCCACTTGGTGCTGATTTCA ACTATCGCGAAGAGCTGAAAAAGCTTGATGTAGAAGCGCTAAAGCGCGATCTGAAAGCGTTAATGACCAATAGCCAAGAG TGGTGGCCGGCCGACTGGGGACATTACGGCGGTTTGATGATTCGTATGGCATGGCACTCTGCGGGTACCTACCGTATTGC CGATGGTCGTGGCGGCGGCGGTACCGGTAACCAACGTTTTGCCCCACTGAACTCATGGCCTGATAACGCCAACTTAGATA AAGCACGCCGTTTGCTGTGGCCTATCAAACAAAAGTACGGTAACAAAATCAGCTGGGCGGATTTGATGATCCTCGCGGGG AACATGGCTTATGAATCGATGGGCCTCAAAACCTTTGGTTTTGCCTTTGGCCGCGAAGACATCTGGCACCCAGAAAAAGA CATTTACTGGGGTTCTGAAAAAGAGTGGCTTGCCAAATCTGGCGGTGAAAATAGCCGTTACTCTGGTCAGCGCGATCTCG AAAACCCACTTGCGGCCGTCATGATGGGGCTTATCTACGTCAACCCAGAAGGTGTGGATGGAAACCCAGATCCACTCAAA ACGGCGCAAGACATGCGTGTCACTTTTGCTCGCATGGCAATGAATGACGAAGAGACCGTTGCTCTGACGGCTGGCGGCCA TACGGTGGGTAAAGCGCACGGTAATGGCAAAGCTTCTAACCTTGGCCCTGATCCTGAAGGCGCTGAACTGCACGAACAAG GCTTAGGTTGGAACAACCACACCAGCCGTGGGATTGGTCGAAACACCGTCACCAGTGGTATTGAAGGTGCATGGACCACT CACCCAACCCGTTGGGATAACGAATATTTCTACTTACTGCTCAGCTATGAATGGCAGCTCACTAAGAGCCCTGCAGGTGC ATGGCAATGGGAACCTGTCAACATCAAAGAGGAAGATAAACCGGTTGATGTGGAAGACCCAAGTATTCGCTACAACCCAA TGATGACCGATGCCGATATGGCTCTGAAAATCGATCCTGAATATCGCAAGATTTCAGAGCGCTTCTACAAAGATCCCGCT TACTTCTCAGAAGTGTTTGCGCGAGCTTGGTTTAAGCTCACTCACCGCGATATGGGACCAAAAGCGCGCTACTTTGGCCC AGATGTTCCGGCAGAAGATTTGATCTGGCAAGACCCTGTTCCAGCAGGTCGTAAAGATTATGATGTCAATGCGGTCAAAG CAAAAATCGCGGCAAGCGGTCTAAGCATCAGTGAAATGGTCAGCACCGCTTGGGATAGCGCTCGTACTTTCCGTGGTTCT GATAAACGTGGGGGAGCCAACGGGGCGCGTATTCGCCTCGCTCCACAAAAAGATTGGGAAGGCAACGAACCTGCGCGTCT TGGTAAAGTTCTGGCGGTATTAGAGAAAATTGCCGCTGAATCTGGCATCAGTATCGCCGATACGATTGTTCTGGCTGGTA ACGTAGGTATCGAACAAGCGGCTAAAGCCGCGGGCGTGAATGTGACCGTACCGTTCGCACCGGGACGCGGCGATGCGACA ATCGAACAAACCGATGTTGAGTCCTTTGAAGTGCTTGAGCCTCTCGCGGATGGCTTCCGTAACTGGCAGAAAAAGCATTA TGTGGTCACACCGGAAGAAATGTTGCTCGACAAAGCGCAACTGCTGCGCCTCACCGCTCCAGAAATGACGGTGTTAATTG GTGGCATGCGTGTGCTTGGCACTAACTACGGTGGCAGCCAACACGGCGTGTTTACCGACCGCGTGGGTGCGTTGACCAAC GATTTCTTCGTTAACCTCACCGACATGAGTTACACCTGGAAACCAACTGGTCGCAACTCTTACGAGATTGTTGAACGTAA GAGCGGCAAAGTGAAGTGGACAGCCACTCGTGTTGATCTGGTGTTTGGTTCTAACTCCATCCTACGTGCTTATGCGGAAG TGTACGCACAGGACGACAACAAAGAAAAATTCGTCAAAGACTTTGTTGCCGCATGGACCAAAGTAATGAATGCGGATCGA TTTGATCTGGTGTAA
Upstream 100 bases:
>100_bases AACTGTGCACCTACACCAATATGAGTGCGGGTCTCATAAGAATGGCCAACACGCAGCAACTTTCAACTGAAAGGGAATAA TGCGAAGCAAGGAGTAATCA
Downstream 100 bases:
>100_bases TCCATCTCACCATCCCTTTCAAGGCTGCCGAATGGCAGCCTTTTGTTTTAAATTTGATAGGAGATTATTTCTTATCGATC TCTTCATAGACTAAATTTTT
Product: catalase/peroxidase
Products: NA
Alternate protein names: CP; Peroxidase/catalase [H]
Number of amino acids: Translated: 724; Mature: 724
Protein sequence:
>724_residues MEHNKAGSSGQCPVMHGGLTSASMSNMDWWPKALNLDILHQHDSKTNPLGADFNYREELKKLDVEALKRDLKALMTNSQE WWPADWGHYGGLMIRMAWHSAGTYRIADGRGGGGTGNQRFAPLNSWPDNANLDKARRLLWPIKQKYGNKISWADLMILAG NMAYESMGLKTFGFAFGREDIWHPEKDIYWGSEKEWLAKSGGENSRYSGQRDLENPLAAVMMGLIYVNPEGVDGNPDPLK TAQDMRVTFARMAMNDEETVALTAGGHTVGKAHGNGKASNLGPDPEGAELHEQGLGWNNHTSRGIGRNTVTSGIEGAWTT HPTRWDNEYFYLLLSYEWQLTKSPAGAWQWEPVNIKEEDKPVDVEDPSIRYNPMMTDADMALKIDPEYRKISERFYKDPA YFSEVFARAWFKLTHRDMGPKARYFGPDVPAEDLIWQDPVPAGRKDYDVNAVKAKIAASGLSISEMVSTAWDSARTFRGS DKRGGANGARIRLAPQKDWEGNEPARLGKVLAVLEKIAAESGISIADTIVLAGNVGIEQAAKAAGVNVTVPFAPGRGDAT IEQTDVESFEVLEPLADGFRNWQKKHYVVTPEEMLLDKAQLLRLTAPEMTVLIGGMRVLGTNYGGSQHGVFTDRVGALTN DFFVNLTDMSYTWKPTGRNSYEIVERKSGKVKWTATRVDLVFGSNSILRAYAEVYAQDDNKEKFVKDFVAAWTKVMNADR FDLV
Sequences:
>Translated_724_residues MEHNKAGSSGQCPVMHGGLTSASMSNMDWWPKALNLDILHQHDSKTNPLGADFNYREELKKLDVEALKRDLKALMTNSQE WWPADWGHYGGLMIRMAWHSAGTYRIADGRGGGGTGNQRFAPLNSWPDNANLDKARRLLWPIKQKYGNKISWADLMILAG NMAYESMGLKTFGFAFGREDIWHPEKDIYWGSEKEWLAKSGGENSRYSGQRDLENPLAAVMMGLIYVNPEGVDGNPDPLK TAQDMRVTFARMAMNDEETVALTAGGHTVGKAHGNGKASNLGPDPEGAELHEQGLGWNNHTSRGIGRNTVTSGIEGAWTT HPTRWDNEYFYLLLSYEWQLTKSPAGAWQWEPVNIKEEDKPVDVEDPSIRYNPMMTDADMALKIDPEYRKISERFYKDPA YFSEVFARAWFKLTHRDMGPKARYFGPDVPAEDLIWQDPVPAGRKDYDVNAVKAKIAASGLSISEMVSTAWDSARTFRGS DKRGGANGARIRLAPQKDWEGNEPARLGKVLAVLEKIAAESGISIADTIVLAGNVGIEQAAKAAGVNVTVPFAPGRGDAT IEQTDVESFEVLEPLADGFRNWQKKHYVVTPEEMLLDKAQLLRLTAPEMTVLIGGMRVLGTNYGGSQHGVFTDRVGALTN DFFVNLTDMSYTWKPTGRNSYEIVERKSGKVKWTATRVDLVFGSNSILRAYAEVYAQDDNKEKFVKDFVAAWTKVMNADR FDLV >Mature_724_residues MEHNKAGSSGQCPVMHGGLTSASMSNMDWWPKALNLDILHQHDSKTNPLGADFNYREELKKLDVEALKRDLKALMTNSQE WWPADWGHYGGLMIRMAWHSAGTYRIADGRGGGGTGNQRFAPLNSWPDNANLDKARRLLWPIKQKYGNKISWADLMILAG NMAYESMGLKTFGFAFGREDIWHPEKDIYWGSEKEWLAKSGGENSRYSGQRDLENPLAAVMMGLIYVNPEGVDGNPDPLK TAQDMRVTFARMAMNDEETVALTAGGHTVGKAHGNGKASNLGPDPEGAELHEQGLGWNNHTSRGIGRNTVTSGIEGAWTT HPTRWDNEYFYLLLSYEWQLTKSPAGAWQWEPVNIKEEDKPVDVEDPSIRYNPMMTDADMALKIDPEYRKISERFYKDPA YFSEVFARAWFKLTHRDMGPKARYFGPDVPAEDLIWQDPVPAGRKDYDVNAVKAKIAASGLSISEMVSTAWDSARTFRGS DKRGGANGARIRLAPQKDWEGNEPARLGKVLAVLEKIAAESGISIADTIVLAGNVGIEQAAKAAGVNVTVPFAPGRGDAT IEQTDVESFEVLEPLADGFRNWQKKHYVVTPEEMLLDKAQLLRLTAPEMTVLIGGMRVLGTNYGGSQHGVFTDRVGALTN DFFVNLTDMSYTWKPTGRNSYEIVERKSGKVKWTATRVDLVFGSNSILRAYAEVYAQDDNKEKFVKDFVAAWTKVMNADR FDLV
Specific function: Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity [H]
COG id: COG0376
COG function: function code P; Catalase (peroxidase I)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peroxidase family. Peroxidase/catalase subfamily [H]
Homologues:
Organism=Escherichia coli, GI1790378, Length=731, Percent_Identity=60.1915184678523, Blast_Score=853, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000763 - InterPro: IPR010255 - InterPro: IPR002016 - InterPro: IPR019794 [H]
Pfam domain/function: PF00141 peroxidase [H]
EC number: =1.11.1.6; =1.11.1.7 [H]
Molecular weight: Translated: 80652; Mature: 80652
Theoretical pI: Translated: 6.04; Mature: 6.04
Prosite motif: PS00436 PEROXIDASE_2 ; PS50873 PEROXIDASE_4
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEHNKAGSSGQCPVMHGGLTSASMSNMDWWPKALNLDILHQHDSKTNPLGADFNYREELK CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHH KLDVEALKRDLKALMTNSQEWWPADWGHYGGLMIRMAWHSAGTYRIADGRGGGGTGNQRF HCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEECCCCCCCCCCCCC APLNSWPDNANLDKARRLLWPIKQKYGNKISWADLMILAGNMAYESMGLKTFGFAFGRED CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHEEEEEECCHHHHHCCCHHHHHHHCCCC IWHPEKDIYWGSEKEWLAKSGGENSRYSGQRDLENPLAAVMMGLIYVNPEGVDGNPDPLK CCCCCCCCEECCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHEEEECCCCCCCCCCCCC TAQDMRVTFARMAMNDEETVALTAGGHTVGKAHGNGKASNLGPDPEGAELHEQGLGWNNH CHHHHHHHHHHHHCCCCCEEEEEECCCEEECCCCCCCCCCCCCCCCCCHHHHHCCCCCCC TSRGIGRNTVTSGIEGAWTTHPTRWDNEYFYLLLSYEWQLTKSPAGAWQWEPVNIKEEDK CCCCCCCHHHHCCCCCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCEECCCCCCCCCCC PVDVEDPSIRYNPMMTDADMALKIDPEYRKISERFYKDPAYFSEVFARAWFKLTHRDMGP CCCCCCCCEEECCCCCCCCCEEEECCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCC KARYFGPDVPAEDLIWQDPVPAGRKDYDVNAVKAKIAASGLSISEMVSTAWDSARTFRGS CCCCCCCCCCHHHCEECCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC DKRGGANGARIRLAPQKDWEGNEPARLGKVLAVLEKIAAESGISIADTIVLAGNVGIEQA CCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHH AKAAGVNVTVPFAPGRGDATIEQTDVESFEVLEPLADGFRNWQKKHYVVTPEEMLLDKAQ HHHCCCEEEEECCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHCEEEECHHHHHHHHHH LLRLTAPEMTVLIGGMRVLGTNYGGSQHGVFTDRVGALTNDFFVNLTDMSYTWKPTGRNS HHHCCCCCEEEEECCEEEEECCCCCCCCCEEHHHHHCCCCCEEEEEECCEEEECCCCCCC YEIVERKSGKVKWTATRVDLVFGSNSILRAYAEVYAQDDNKEKFVKDFVAAWTKVMNADR HHHHCCCCCCEEEEEEEEEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCH FDLV HCCC >Mature Secondary Structure MEHNKAGSSGQCPVMHGGLTSASMSNMDWWPKALNLDILHQHDSKTNPLGADFNYREELK CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHH KLDVEALKRDLKALMTNSQEWWPADWGHYGGLMIRMAWHSAGTYRIADGRGGGGTGNQRF HCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEECCCCCCCCCCCCC APLNSWPDNANLDKARRLLWPIKQKYGNKISWADLMILAGNMAYESMGLKTFGFAFGRED CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHEEEEEECCHHHHHCCCHHHHHHHCCCC IWHPEKDIYWGSEKEWLAKSGGENSRYSGQRDLENPLAAVMMGLIYVNPEGVDGNPDPLK CCCCCCCCEECCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHEEEECCCCCCCCCCCCC TAQDMRVTFARMAMNDEETVALTAGGHTVGKAHGNGKASNLGPDPEGAELHEQGLGWNNH CHHHHHHHHHHHHCCCCCEEEEEECCCEEECCCCCCCCCCCCCCCCCCHHHHHCCCCCCC TSRGIGRNTVTSGIEGAWTTHPTRWDNEYFYLLLSYEWQLTKSPAGAWQWEPVNIKEEDK CCCCCCCHHHHCCCCCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCEECCCCCCCCCCC PVDVEDPSIRYNPMMTDADMALKIDPEYRKISERFYKDPAYFSEVFARAWFKLTHRDMGP CCCCCCCCEEECCCCCCCCCEEEECCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCC KARYFGPDVPAEDLIWQDPVPAGRKDYDVNAVKAKIAASGLSISEMVSTAWDSARTFRGS CCCCCCCCCCHHHCEECCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC DKRGGANGARIRLAPQKDWEGNEPARLGKVLAVLEKIAAESGISIADTIVLAGNVGIEQA CCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHH AKAAGVNVTVPFAPGRGDATIEQTDVESFEVLEPLADGFRNWQKKHYVVTPEEMLLDKAQ HHHCCCEEEEECCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHCEEEECHHHHHHHHHH LLRLTAPEMTVLIGGMRVLGTNYGGSQHGVFTDRVGALTNDFFVNLTDMSYTWKPTGRNS HHHCCCCCEEEEECCEEEEECCCCCCCCCEEHHHHHCCCCCEEEEEECCEEEECCCCCCC YEIVERKSGKVKWTATRVDLVFGSNSILRAYAEVYAQDDNKEKFVKDFVAAWTKVMNADR HHHHCCCCCCEEEEEEEEEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCH FDLV HCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA