| Definition | Vibrio cholerae M66-2 chromosome I, complete genome. |
|---|---|
| Accession | NC_012578 |
| Length | 2,892,523 |
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The map label for this gene is 227081610
Identifier: 227081610
GI number: 227081610
Start: 1493217
End: 1493693
Strand: Reverse
Name: 227081610
Synonym: VCM66_1394
Alternate gene names: NA
Gene position: 1493693-1493217 (Counterclockwise)
Preceding gene: 227081611
Following gene: 227081609
Centisome position: 51.64
GC content: 42.98
Gene sequence:
>477_bases ATGGTAAAGCCTTGGTATAAACAATTTTGGCCTTGGTTCCTGATCATACTACCTCTCACTGTAGTGATCTGGACGGTCGT CACCGTTATTGTTTTTGCAAATAACTCCGTTTCATTAGTCACTGAGGATTACTATAAAAAAGGCAAAGGCATTAATATTG ATCTTACTAAAATCAATGTCGCCAAAGAGTTGGGATTGAACGCTACCGTTCACTCTGAAGGTAGCACGGTCATCATTGAA TTCGACAAAGGTCAACTTGCTCACTTCCCTGCTATTCAAGCCATGTTTGCTCATCGCACACTGCCTGATCGCGATTTTTC TCAGCTGATTACGGCTGATGCAAAAGGAATTTATCGTTTAAATCTGGAGAATGAACTGCAAGGCCCTTGGTTTATCGAAC TGACTCCGCATGATGGCCAATGGCTTGTCCAAGGTCGCGTCACCTTCCCCTCTTCTCCAACGGCATTAATGAATTAA
Upstream 100 bases:
>100_bases AAGCAACTCAGAGAATAAGTAACATTCTAATAACAGCCCCTTTTCAAGGGGCTGTCTTTCTTATATTTTTTAGCCTCTTT TCGTTGTAGAGAACTTTCTT
Downstream 100 bases:
>100_bases GATCATGGACAAAACGTGTTATCACTGCGGTGAGGATGTACCTGCCGGCACAAATTTCCACGTTGATATTTTGGGTGAAC AACGTGACATGTGCTGCCCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 158; Mature: 158
Protein sequence:
>158_residues MVKPWYKQFWPWFLIILPLTVVIWTVVTVIVFANNSVSLVTEDYYKKGKGINIDLTKINVAKELGLNATVHSEGSTVIIE FDKGQLAHFPAIQAMFAHRTLPDRDFSQLITADAKGIYRLNLENELQGPWFIELTPHDGQWLVQGRVTFPSSPTALMN
Sequences:
>Translated_158_residues MVKPWYKQFWPWFLIILPLTVVIWTVVTVIVFANNSVSLVTEDYYKKGKGINIDLTKINVAKELGLNATVHSEGSTVIIE FDKGQLAHFPAIQAMFAHRTLPDRDFSQLITADAKGIYRLNLENELQGPWFIELTPHDGQWLVQGRVTFPSSPTALMN >Mature_158_residues MVKPWYKQFWPWFLIILPLTVVIWTVVTVIVFANNSVSLVTEDYYKKGKGINIDLTKINVAKELGLNATVHSEGSTVIIE FDKGQLAHFPAIQAMFAHRTLPDRDFSQLITADAKGIYRLNLENELQGPWFIELTPHDGQWLVQGRVTFPSSPTALMN
Specific function: Unknown
COG id: COG3198
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17943; Mature: 17943
Theoretical pI: Translated: 6.97; Mature: 6.97
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVKPWYKQFWPWFLIILPLTVVIWTVVTVIVFANNSVSLVTEDYYKKGKGINIDLTKINV CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHCCCCCEEEEEEEEE AKELGLNATVHSEGSTVIIEFDKGQLAHFPAIQAMFAHRTLPDRDFSQLITADAKGIYRL HHHCCCCEEEECCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHCCCCEEEE NLENELQGPWFIELTPHDGQWLVQGRVTFPSSPTALMN ECCCCCCCCEEEEEECCCCCEEEEEEEECCCCCHHCCC >Mature Secondary Structure MVKPWYKQFWPWFLIILPLTVVIWTVVTVIVFANNSVSLVTEDYYKKGKGINIDLTKINV CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHCCCCCEEEEEEEEE AKELGLNATVHSEGSTVIIEFDKGQLAHFPAIQAMFAHRTLPDRDFSQLITADAKGIYRL HHHCCCCEEEECCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHCCCCEEEE NLENELQGPWFIELTPHDGQWLVQGRVTFPSSPTALMN ECCCCCCCCEEEEEECCCCCEEEEEEEECCCCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA