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The map label for this gene is hcp-1 [H]

Identifier: 227081586

GI number: 227081586

Start: 1467074

End: 1467592

Strand: Direct

Name: hcp-1 [H]

Synonym: VCM66_1370

Alternate gene names: 227081586

Gene position: 1467074-1467592 (Clockwise)

Preceding gene: 227081583

Following gene: 227081587

Centisome position: 50.72

GC content: 49.52

Gene sequence:

>519_bases
ATGCCAACTCCATGTTATATCTCTATCGAAGGCCAAACTCAGGGTCTTATCACTGCAGGTGCATGTACTGCTGACTCTAT
CGGCGATTCATTCGTTGAAGGCCACGAAGATGAGATGCTGGTTCAGCAGTTTGACCACGTTGTGACTGTACCGACTGACC
CACAATCTGGTCAGCCTTCAGGCCAACGTGTGCACAAGCCATTCAAATTCACTGTGGCGCTGAACAAAGCGGTTCCTCTG
CTGTACAACGCGCTCTCTTCTGGTGAGAAGCTGAAAACCGTTGAGCTGAAGTGGTACCGTACCTCTATCGAAGGTAAACA
AGAGAACTTCTTCACCACTAAGCTGGAAAACGCGTCTATCGTCGACATCCACTGTGAAATGCCACACTGCCAAGACCCAG
CAAAATCTGACTTTACTCAGAATGTGACTGTGTCTCTGTCTTACCGCAAAATCACTTGGGACCACGTTAACGCGGGCACC
TCAGGCTCTGATGACTGGCGTAAGCCAATCGAAGCGTAA

Upstream 100 bases:

>100_bases
GTGAAAGTTGGCATCCCACTTGCTCTTTGTATCGCGACGGTGCGCAGAGCGCGTTAACTCATTCATTGACTTAAAAATGA
TTTATTGAAAGGAAATAGCC

Downstream 100 bases:

>100_bases
TTTACGCTGCGAGAATGTCGCTCACCTTAGGGTGGGCGGCTGTGAACCTTAAACCCAGAGTATCGTTTGGCGCGGTATTG
TGGGTTTAAGGTTTTGCCAT

Product: hcp protein

Products: NA

Alternate protein names: Secreted protein hcp [H]

Number of amino acids: Translated: 172; Mature: 171

Protein sequence:

>172_residues
MPTPCYISIEGQTQGLITAGACTADSIGDSFVEGHEDEMLVQQFDHVVTVPTDPQSGQPSGQRVHKPFKFTVALNKAVPL
LYNALSSGEKLKTVELKWYRTSIEGKQENFFTTKLENASIVDIHCEMPHCQDPAKSDFTQNVTVSLSYRKITWDHVNAGT
SGSDDWRKPIEA

Sequences:

>Translated_172_residues
MPTPCYISIEGQTQGLITAGACTADSIGDSFVEGHEDEMLVQQFDHVVTVPTDPQSGQPSGQRVHKPFKFTVALNKAVPL
LYNALSSGEKLKTVELKWYRTSIEGKQENFFTTKLENASIVDIHCEMPHCQDPAKSDFTQNVTVSLSYRKITWDHVNAGT
SGSDDWRKPIEA
>Mature_171_residues
PTPCYISIEGQTQGLITAGACTADSIGDSFVEGHEDEMLVQQFDHVVTVPTDPQSGQPSGQRVHKPFKFTVALNKAVPLL
YNALSSGEKLKTVELKWYRTSIEGKQENFFTTKLENASIVDIHCEMPHCQDPAKSDFTQNVTVSLSYRKITWDHVNAGTS
GSDDWRKPIEA

Specific function: Unknown

COG id: COG3157

COG function: function code S; Hemolysin-coregulated protein (uncharacterized)

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hcp1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017728
- InterPro:   IPR008514 [H]

Pfam domain/function: PF05638 DUF796 [H]

EC number: NA

Molecular weight: Translated: 19059; Mature: 18928

Theoretical pI: Translated: 5.22; Mature: 5.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTPCYISIEGQTQGLITAGACTADSIGDSFVEGHEDEMLVQQFDHVVTVPTDPQSGQPS
CCCCEEEEECCCCCCEEEECCCCCCCCCCHHHCCCCHHHHHHHCCCEEECCCCCCCCCCC
GQRVHKPFKFTVALNKAVPLLYNALSSGEKLKTVELKWYRTSIEGKQENFFTTKLENASI
CCCCCCCEEEEEEECCCHHHHHHHHCCCCEEEEEEEEEEEECCCCCCCCEEEEEECCCEE
VDIHCEMPHCQDPAKSDFTQNVTVSLSYRKITWDHVNAGTSGSDDWRKPIEA
EEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PTPCYISIEGQTQGLITAGACTADSIGDSFVEGHEDEMLVQQFDHVVTVPTDPQSGQPS
CCCEEEEECCCCCCEEEECCCCCCCCCCHHHCCCCHHHHHHHCCCEEECCCCCCCCCCC
GQRVHKPFKFTVALNKAVPLLYNALSSGEKLKTVELKWYRTSIEGKQENFFTTKLENASI
CCCCCCCEEEEEEECCCHHHHHHHHCCCCEEEEEEEEEEEECCCCCCCCEEEEEECCCEE
VDIHCEMPHCQDPAKSDFTQNVTVSLSYRKITWDHVNAGTSGSDDWRKPIEA
EEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]