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The map label for this gene is yciU [C]

Identifier: 227081380

GI number: 227081380

Start: 1241218

End: 1241538

Strand: Reverse

Name: yciU [C]

Synonym: VCM66_1163

Alternate gene names: 227081380

Gene position: 1241538-1241218 (Counterclockwise)

Preceding gene: 227081381

Following gene: 227081379

Centisome position: 42.92

GC content: 49.53

Gene sequence:

>321_bases
ATGGCTGAGCTTATTTCTATCGACGACACCATTGATACCGCATACGACATTTTCTTGGAAATGGCGCCAGATAACCTCGA
ACCTGCTGACGTGATTCTGTTCACGGCGCAGTTTGATGATCGCGGCGCGGCTGAGCTGGTCGATGTCGGCGATGACTGGG
ATGACCAAGTGGGTTTCGAAGTCGATAAAGAAATCTATGCCGAAGTACGCATTGGTCTGGTGAACGAAGAAAATGATGTG
CTGGACGATGTGTTCGCCCGTATGTTGATCAGTCGTGACCCAGATCAGAAGTTTTGCCATATGCTGTGGAAGCGTGACTA
A

Upstream 100 bases:

>100_bases
CCAACTGGATTAGTGGTTCAAGTTCCAGAGTACATTGCAACGGGCGATCGTATCGTTATCAATACTGCTGAACGCAAATT
CATGAACCGAGCGTAATCTT

Downstream 100 bases:

>100_bases
ACTTCTCAACGCCAGCTTTCGAGCTGGCGTTGCTCTTTATTGACATTCCAAGATGTTAGATTGAGACATAAACCCAAGCC
TTATCACAAAAAATTCCGCT

Product: dsDNA-mimic protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 106; Mature: 105

Protein sequence:

>106_residues
MAELISIDDTIDTAYDIFLEMAPDNLEPADVILFTAQFDDRGAAELVDVGDDWDDQVGFEVDKEIYAEVRIGLVNEENDV
LDDVFARMLISRDPDQKFCHMLWKRD

Sequences:

>Translated_106_residues
MAELISIDDTIDTAYDIFLEMAPDNLEPADVILFTAQFDDRGAAELVDVGDDWDDQVGFEVDKEIYAEVRIGLVNEENDV
LDDVFARMLISRDPDQKFCHMLWKRD
>Mature_105_residues
AELISIDDTIDTAYDIFLEMAPDNLEPADVILFTAQFDDRGAAELVDVGDDWDDQVGFEVDKEIYAEVRIGLVNEENDVL
DDVFARMLISRDPDQKFCHMLWKRD

Specific function: Unknown

COG id: COG3099

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0263 family

Homologues:

Organism=Escherichia coli, GI87081860, Length=100, Percent_Identity=50, Blast_Score=113, Evalue=2e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1163_VIBCM (C3LLQ4)

Other databases:

- EMBL:   CP001233
- RefSeq:   YP_002809931.1
- ProteinModelPortal:   C3LLQ4
- SMR:   C3LLQ4
- GeneID:   7772441
- GenomeReviews:   CP001233_GR
- KEGG:   vcm:VCM66_1163
- OMA:   DIAYDIF
- ProtClustDB:   PRK05094
- HAMAP:   MF_00680
- InterPro:   IPR007376
- PIRSF:   PIRSF004916
- ProDom:   PD020447

Pfam domain/function: PF04269 DUF440; SSF102816 dsDNA_mimic_put

EC number: NA

Molecular weight: Translated: 12174; Mature: 12042

Theoretical pI: Translated: 3.64; Mature: 3.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAELISIDDTIDTAYDIFLEMAPDNLEPADVILFTAQFDDRGAAELVDVGDDWDDQVGFE
CCCEECCCCHHHHHHHHHHEECCCCCCCCEEEEEEECCCCCCCCEEEECCCCCCCCCCCE
VDKEIYAEVRIGLVNEENDVLDDVFARMLISRDPDQKFCHMLWKRD
ECHHHHHHHHEEEECCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCC
>Mature Secondary Structure 
AELISIDDTIDTAYDIFLEMAPDNLEPADVILFTAQFDDRGAAELVDVGDDWDDQVGFE
CCEECCCCHHHHHHHHHHEECCCCCCCCEEEEEEECCCCCCCCEEEECCCCCCCCCCCE
VDKEIYAEVRIGLVNEENDVLDDVFARMLISRDPDQKFCHMLWKRD
ECHHHHHHHHEEEECCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA