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The map label for this gene is yiaD [H]

Identifier: 227081367

GI number: 227081367

Start: 1225287

End: 1225958

Strand: Reverse

Name: yiaD [H]

Synonym: VCM66_1150

Alternate gene names: 227081367

Gene position: 1225958-1225287 (Counterclockwise)

Preceding gene: 227081368

Following gene: 227081366

Centisome position: 42.38

GC content: 50.74

Gene sequence:

>672_bases
GTGTTGAACAAAACCACTTTGCTGTTAGCCGCAGTCGTCGCTTTGTCTGGCTGTCAGGCTACCCAACGCCAAAATGCGAC
AACCGGAGAAACAGAAACCAACGCCACCACTAAAGGTGCATTATTAGGCGTCCTAGCCGGTGCAGCCGTTGGTTTAGCGA
CAGGTGACGATGCCAAAGAGCGCCGTAAGCATGCCTTAATTGGTGCAGCTGGGGGCGCTGCAGTCGGCGGCGGTATCGGA
TACTACTTTGATCAGCAAGAAGCAGAGTTACGCAAAGCATTACTGGATTCTGGTGTTCAAGTGGTACGCGTAGGTGAAAA
TCAACTGATGCTACGCATGGAAAACGGTATTGGCTTTACCAGCAACTCTTACCAACTGGATAGCTATATCCATAAAACTT
TACGCGGTGTCGCGCGTATTCTGGTCGAATACCCAGATACCAGCTTAGTGATTGAAGGCCATACCGATAGCACAGGTAGT
GATACCACCAACCAAGTGCTTTCTGAGAAGCGTGCCGAGTCAGTGCGTTCATTCCTGTTATCTCAAGGGGTTGCAGCGGG
GCGTGCAATTGCTCGTGGTAATGGTGAGCGTTTCCCTCTATGCTCAAATAACACCGCAGAAGGACGCGCTTGTAACCGCC
GCGTCGAGATTCAAATTCTGCCACTCAAATAG

Upstream 100 bases:

>100_bases
AGCATTTGTAAGAGATTGGTAAAATGCGCCCCCCACTGATTGACGGGGAACGAGAATTCTCGTCTATTGCGCGAAATATC
ATTCAATAAACGGAGAGAAT

Downstream 100 bases:

>100_bases
TGTTTAAACGCTCATTAGCTTGAAGTTGCAGCCATAACGGCTGCAACTTCAACTCAACAGCGAATTGACCGAACGTTTCA
TTTTCAGGGAAAGAAAGATC

Product: putative lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 223; Mature: 223

Protein sequence:

>223_residues
MLNKTTLLLAAVVALSGCQATQRQNATTGETETNATTKGALLGVLAGAAVGLATGDDAKERRKHALIGAAGGAAVGGGIG
YYFDQQEAELRKALLDSGVQVVRVGENQLMLRMENGIGFTSNSYQLDSYIHKTLRGVARILVEYPDTSLVIEGHTDSTGS
DTTNQVLSEKRAESVRSFLLSQGVAAGRAIARGNGERFPLCSNNTAEGRACNRRVEIQILPLK

Sequences:

>Translated_223_residues
MLNKTTLLLAAVVALSGCQATQRQNATTGETETNATTKGALLGVLAGAAVGLATGDDAKERRKHALIGAAGGAAVGGGIG
YYFDQQEAELRKALLDSGVQVVRVGENQLMLRMENGIGFTSNSYQLDSYIHKTLRGVARILVEYPDTSLVIEGHTDSTGS
DTTNQVLSEKRAESVRSFLLSQGVAAGRAIARGNGERFPLCSNNTAEGRACNRRVEIQILPLK
>Mature_223_residues
MLNKTTLLLAAVVALSGCQATQRQNATTGETETNATTKGALLGVLAGAAVGLATGDDAKERRKHALIGAAGGAAVGGGIG
YYFDQQEAELRKALLDSGVQVVRVGENQLMLRMENGIGFTSNSYQLDSYIHKTLRGVARILVEYPDTSLVIEGHTDSTGS
DTTNQVLSEKRAESVRSFLLSQGVAAGRAIARGNGERFPLCSNNTAEGRACNRRVEIQILPLK

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential). Cell inner membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=225, Percent_Identity=48.4444444444444, Blast_Score=145, Evalue=2e-36,
Organism=Escherichia coli, GI1787191, Length=87, Percent_Identity=42.5287356321839, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1788957, Length=115, Percent_Identity=35.6521739130435, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 23534; Mature: 23534

Theoretical pI: Translated: 8.47; Mature: 8.47

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00141 ASP_PROTEASE ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNKTTLLLAAVVALSGCQATQRQNATTGETETNATTKGALLGVLAGAAVGLATGDDAKE
CCCHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHH
RRKHALIGAAGGAAVGGGIGYYFDQQEAELRKALLDSGVQVVRVGENQLMLRMENGIGFT
HHHHHEEECCCCCHHCCCCCEEECCHHHHHHHHHHHCCCEEEEECCCEEEEEECCCCCCC
SNSYQLDSYIHKTLRGVARILVEYPDTSLVIEGHTDSTGSDTTNQVLSEKRAESVRSFLL
CCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHH
SQGVAAGRAIARGNGERFPLCSNNTAEGRACNRRVEIQILPLK
HCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECC
>Mature Secondary Structure
MLNKTTLLLAAVVALSGCQATQRQNATTGETETNATTKGALLGVLAGAAVGLATGDDAKE
CCCHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHH
RRKHALIGAAGGAAVGGGIGYYFDQQEAELRKALLDSGVQVVRVGENQLMLRMENGIGFT
HHHHHEEECCCCCHHCCCCCEEECCHHHHHHHHHHHCCCEEEEECCCEEEEEECCCCCCC
SNSYQLDSYIHKTLRGVARILVEYPDTSLVIEGHTDSTGSDTTNQVLSEKRAESVRSFLL
CCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHH
SQGVAAGRAIARGNGERFPLCSNNTAEGRACNRRVEIQILPLK
HCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2180922 [H]