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The map label for this gene is rodZ [H]

Identifier: 227080937

GI number: 227080937

Start: 767353

End: 768534

Strand: Direct

Name: rodZ [H]

Synonym: VCM66_0716

Alternate gene names: 227080937

Gene position: 767353-768534 (Clockwise)

Preceding gene: 227080936

Following gene: 227080938

Centisome position: 26.53

GC content: 48.73

Gene sequence:

>1182_bases
TTGCACCGATTAAGCCAAGTTGTTCCATTACTACCTATAATCAAAAATAAAAGTGAATGGCCCAGCGGCTTAGTCCTGAC
TAAGAGATTGAAATTACGGATGAATACTGAACAGCAAGATTACAACCAAACTGAGACGACCGAGCAACTAAATCAACCTG
CCATCGAGAAAGTCGCTCCCGGCACTTTACTCAAGCAAAAACGTGAAGATTTGGGGCTGACTCAGCGCCAAATCGCTGAC
CGCCTCAGATTACGCCTTTCTATTATCCAAAGCATTGAAGAGAACCGTTTTGAAGATGGTCAAGTTGCCACTTTTACTCG
CGGTTATTTGCGTTCGTATGCCAAAGCGGTGGGTATTCGTGAATCTGAGATCTTGTGTGCTTTTGATGACAGCTATTGCC
AAAAGCCAGAAGTTCAGCCGGATATGAAAAGCTTCTCGAAAAAGACCAAGCGTCAGTTGCACGATAGTCGAATCATGCTG
ATCACTTGGGTGATCTTAGCGGTTATCGTCGGCATGTCGACCTTGGGGTGGTGGCAAAATAGCCAGAAGAACAGCTTAAT
CCCGGATAAAACAACCATTGCGCCGAGTGCTATTTCGGATATTCAGTCTAGCAATGACACCAGTCTTGCCAATGAAGACT
TCGCAACCGTTCCTCCTCTCAATGAGCTACAAGATGCGGCGCCAGCGAGTGAAGAGGTACCGATGAGCCAAGAGTCTCTT
TCTGGTGAGGCCAGTGAATTGACTCCGCCAGCACCGAATGAAGCTGATGTGGTGACAGATAAACCTGTGGTTGAAGAAAC
GGCGGCGGCACCAGTAGCACCAGCTCAGCCTCAAGGACAAACTCCAGTTCAGTCTCAAGCTCCAGCGGCAGCTGCGCCTG
TGACTCAACCTGAAGCGGCGCCTAGTGCACCTAGTCAACCTGTGAGCTCTTCCACTGAGAGCGCTTCCGCACTGCTGGTG
ATGAATTTTTCTGCCGATTGCTGGATTCAAGTCAAAGATGCTACGGGCAAAACACTGTCAACGGGTGTGAAAAAAGCAGG
GCAGAGTGTGAGTTTGAGTGGCCAGCGCCCTTATAAATTGGTGTTGGGTGCACCAGAAGGGGTTTCAATCACATTAGCGA
GTGAACCCGTCGACCTTTCTGGGTATACTTCCGGCAAAGTAGCAAGATTGACCTTACCTTAG

Upstream 100 bases:

>100_bases
TTATTGGCCATTTCTTTATTGTTTAGTCAACAATATCTATTAGAATGAGGCAAATTTCTCAAACTTGATTTGAGCTATAC
CCAAGCGACGCGCTAACCGA

Downstream 100 bases:

>100_bases
AAAAATGTCTATGCAACATGAGTCTCCTATCAAACGTCGCCCCTCGACACGTATCTATGTGGGCGACGTTCCTATTGGTG
ATGGTGCGCCCATCGCCGTA

Product: Putative HTH-type transcriptional regulator yfgA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 393; Mature: 393

Protein sequence:

>393_residues
MHRLSQVVPLLPIIKNKSEWPSGLVLTKRLKLRMNTEQQDYNQTETTEQLNQPAIEKVAPGTLLKQKREDLGLTQRQIAD
RLRLRLSIIQSIEENRFEDGQVATFTRGYLRSYAKAVGIRESEILCAFDDSYCQKPEVQPDMKSFSKKTKRQLHDSRIML
ITWVILAVIVGMSTLGWWQNSQKNSLIPDKTTIAPSAISDIQSSNDTSLANEDFATVPPLNELQDAAPASEEVPMSQESL
SGEASELTPPAPNEADVVTDKPVVEETAAAPVAPAQPQGQTPVQSQAPAAAAPVTQPEAAPSAPSQPVSSSTESASALLV
MNFSADCWIQVKDATGKTLSTGVKKAGQSVSLSGQRPYKLVLGAPEGVSITLASEPVDLSGYTSGKVARLTLP

Sequences:

>Translated_393_residues
MHRLSQVVPLLPIIKNKSEWPSGLVLTKRLKLRMNTEQQDYNQTETTEQLNQPAIEKVAPGTLLKQKREDLGLTQRQIAD
RLRLRLSIIQSIEENRFEDGQVATFTRGYLRSYAKAVGIRESEILCAFDDSYCQKPEVQPDMKSFSKKTKRQLHDSRIML
ITWVILAVIVGMSTLGWWQNSQKNSLIPDKTTIAPSAISDIQSSNDTSLANEDFATVPPLNELQDAAPASEEVPMSQESL
SGEASELTPPAPNEADVVTDKPVVEETAAAPVAPAQPQGQTPVQSQAPAAAAPVTQPEAAPSAPSQPVSSSTESASALLV
MNFSADCWIQVKDATGKTLSTGVKKAGQSVSLSGQRPYKLVLGAPEGVSITLASEPVDLSGYTSGKVARLTLP
>Mature_393_residues
MHRLSQVVPLLPIIKNKSEWPSGLVLTKRLKLRMNTEQQDYNQTETTEQLNQPAIEKVAPGTLLKQKREDLGLTQRQIAD
RLRLRLSIIQSIEENRFEDGQVATFTRGYLRSYAKAVGIRESEILCAFDDSYCQKPEVQPDMKSFSKKTKRQLHDSRIML
ITWVILAVIVGMSTLGWWQNSQKNSLIPDKTTIAPSAISDIQSSNDTSLANEDFATVPPLNELQDAAPASEEVPMSQESL
SGEASELTPPAPNEADVVTDKPVVEETAAAPVAPAQPQGQTPVQSQAPAAAAPVTQPEAAPSAPSQPVSSSTESASALLV
MNFSADCWIQVKDATGKTLSTGVKKAGQSVSLSGQRPYKLVLGAPEGVSITLASEPVDLSGYTSGKVARLTLP

Specific function: Cytoskeletal protein that is involved in cell-shape control through regulation of the length of the long axis [H]

COG id: COG1426

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein. Note=Forms helical filaments along the long axis of the cell (By similarity) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788864, Length=366, Percent_Identity=34.6994535519126, Blast_Score=167, Evalue=1e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 42469; Mature: 42469

Theoretical pI: Translated: 5.02; Mature: 5.02

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHRLSQVVPLLPIIKNKSEWPSGLVLTKRLKLRMNTEQQDYNQTETTEQLNQPAIEKVAP
CCCHHHHHHHHHHHCCCCCCCCCEEEEEEEHEEECCCHHHCCHHHHHHHHCCCHHHHHCC
GTLLKQKREDLGLTQRQIADRLRLRLSIIQSIEENRFEDGQVATFTRGYLRSYAKAVGIR
CHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHCCC
ESEILCAFDDSYCQKPEVQPDMKSFSKKTKRQLHDSRIMLITWVILAVIVGMSTLGWWQN
CCCEEEEECHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCC
SQKNSLIPDKTTIAPSAISDIQSSNDTSLANEDFATVPPLNELQDAAPASEEVPMSQESL
CCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCHHHH
SGEASELTPPAPNEADVVTDKPVVEETAAAPVAPAQPQGQTPVQSQAPAAAAPVTQPEAA
CCCHHHCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PSAPSQPVSSSTESASALLVMNFSADCWIQVKDATGKTLSTGVKKAGQSVSLSGQRPYKL
CCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCHHHHHHHHCCCCEEECCCCCEEE
VLGAPEGVSITLASEPVDLSGYTSGKVARLTLP
EEECCCCCEEEEECCCCCCCCCCCCCEEEEECC
>Mature Secondary Structure
MHRLSQVVPLLPIIKNKSEWPSGLVLTKRLKLRMNTEQQDYNQTETTEQLNQPAIEKVAP
CCCHHHHHHHHHHHCCCCCCCCCEEEEEEEHEEECCCHHHCCHHHHHHHHCCCHHHHHCC
GTLLKQKREDLGLTQRQIADRLRLRLSIIQSIEENRFEDGQVATFTRGYLRSYAKAVGIR
CHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHCCC
ESEILCAFDDSYCQKPEVQPDMKSFSKKTKRQLHDSRIMLITWVILAVIVGMSTLGWWQN
CCCEEEEECHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCC
SQKNSLIPDKTTIAPSAISDIQSSNDTSLANEDFATVPPLNELQDAAPASEEVPMSQESL
CCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCHHHH
SGEASELTPPAPNEADVVTDKPVVEETAAAPVAPAQPQGQTPVQSQAPAAAAPVTQPEAA
CCCHHHCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PSAPSQPVSSSTESASALLVMNFSADCWIQVKDATGKTLSTGVKKAGQSVSLSGQRPYKL
CCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCHHHHHHHHCCCCEEECCCCCEEE
VLGAPEGVSITLASEPVDLSGYTSGKVARLTLP
EEECCCCCEEEEECCCCCCCCCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA