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The map label for this gene is secD [H]

Identifier: 227080922

GI number: 227080922

Start: 753289

End: 755142

Strand: Direct

Name: secD [H]

Synonym: VCM66_0701

Alternate gene names: 227080922

Gene position: 753289-755142 (Clockwise)

Preceding gene: 227080921

Following gene: 227080923

Centisome position: 26.04

GC content: 49.95

Gene sequence:

>1854_bases
GTGCTAAACCGTTATCCGTTATGGAAGTATCTGATGGTGATGTTAACCATCGCCGTTGCAGCCTTGTATGCACTTCCAAA
TATCTACGGTGAAGATCCAGCTATCCAAATAACAGGGGCGCGTGGCGCCTCTGTTGATATGTCAACGCTGGATGCTGTCA
CCGATGCGCTCAATAAAGCGCAACTCTCCCAAAAATCCATTGCTCTTGAAAATGGCTCAATCCTTGTTCGTTTCAATGAT
ACGGATACGCAAATCAGCGCCCGAGATATCATCAGTGAAGCGTTAGGTAAGGATAAAATCGTCGCGTTAAACCTCGCTCC
TTCAACGCCATATTGGCTAGAGTCAATTGGTGCTGCACCAATGAAACTCGGCCTTGATCTGCGTGGTGGTGTGCACTTCC
TGATGGAAGTGGATATGGATGCCGCGATGGAAAAATTGGTCAGCCAACAAGAAGAAGCTTTCCGCAGTGATCTGCGTGAC
GAGAAAATTCGTTACCGCGCGATCCGTCCATTATCGGATGCGGTTGAAGTGACCCTGCGTGATGCCGAGCAGCTTGCGCA
AACTAAGCTGCTTCTGGAGTCGAAACACCGTGATATGACCTTTACGACTTCAGAATCCGATGGCCGTTTTGTGCTCGTGG
CTAAGTTTACCGAAGCTCGCTTACAGGAAATTCGCAACTACGCCGTTGAGCAGAACATCACTATTTTGCGTAACCGGGTG
AACGAACTGGGTGTGGCTGAGCCTCTGGTTCAACGCCAAGGTGCGACACGTATCGTGGTAGAGCTGCCGGGTGTACAAGA
TACAGCGCGTGCTAAAGAAATCTTAGGCGCGACCGCAACCCTTGAATTTCGTGAAGTGGACGATAAAGCCGACCTTGCCG
CTGCGGCAGCAGGACGTGCGCCTGCTGGCAGCGAAATCAAGTTCGATCGTAATGGTCGTCCTGTGGTGCTGAAAAAGCGC
GTGATTCTGGGTGGTTCAAGCATTACCGATGCAAGCTCAAGCGCCGACGAATATGGTCGCCCACAGGTGAACATTTCGCT
CGATAGCGAAGGCGGCAACAAGATGTCAGCGTTCTCGAAAAAGAACATTGGCAAGCTGATGGCGACGGTGTTTGCCGAAT
ACAAAGACAGCGGTAAGCGCTCTCCTGAAGGTAAAGTCATTCTGACCAAGCATGAAGAAGTGATTAACCAAGCGACGATT
CAGTCGGCATTGGGACGTAACTTCCGTATTACTGGGATTGATTCACCGGCAGAAGCGCATAACCTTGCTCTGCTATTGCG
TGCCGGTGCTTTGATTGCGCCAATTTCTATCGTCGAAGAGCGCACCATTGGTCCATCAATGGGTCAGCAGAATATCGATA
TGGGTATTCAGGCCTGTATTTGGGGTATGGTGGCGGTAATGCTGTTTACGGTTCTTTACTACCGTAAGTTTGGCATGATT
GCTAACATCGCACTAATGGCGAACCTCGTGTTGATCATTGGCGTAATGTCGATGATCCCGGGCGCAACCATGACCTTGCC
GGGTATTGCTGGTATCGTGTTGACGGTCGGTATGGCGGTCGATGCCAACGTACTGATTTTCGAGCGTATTCGTGAAGAGC
TACGCGAAGGAAAAAATCCGCAGCAAGCGATTCATCAAGGTTACGCTAACGCATTCAGTACCATTGCCGATGCCAACATC
ACCACCTTAATTACGGCGATCATTTTGTTTGCCGTTGGTACAGGGGCGATTAAAGGCTTCGCAGTGACGCTGTCTATCGG
TATTTTAACCTCTATGTTTACCGCGATTGTGGGTACACGTTGTATCGTGAACCTGCTGTATGGCGGCAAACGTATCAACA
AACTGTCGATCTGA

Upstream 100 bases:

>100_bases
GAACACCAACAACGAAGTTGTGATCAAGAAGGACTTCGTGACTGCAGTGCTACCAAAAGGTACGCTGAAATCTCTTTAAA
ACAGCCATAGGATCCTCGCT

Downstream 100 bases:

>100_bases
GGCTGGGGTAAGTTATGTTTCAAATCCTAAAAGCAGACAAAATGATCGACTTTATGCGTTGGTCGAAATTCGCCTTCGCC
TTGTCGCTGGTGATGATTGC

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 617; Mature: 617

Protein sequence:

>617_residues
MLNRYPLWKYLMVMLTIAVAALYALPNIYGEDPAIQITGARGASVDMSTLDAVTDALNKAQLSQKSIALENGSILVRFND
TDTQISARDIISEALGKDKIVALNLAPSTPYWLESIGAAPMKLGLDLRGGVHFLMEVDMDAAMEKLVSQQEEAFRSDLRD
EKIRYRAIRPLSDAVEVTLRDAEQLAQTKLLLESKHRDMTFTTSESDGRFVLVAKFTEARLQEIRNYAVEQNITILRNRV
NELGVAEPLVQRQGATRIVVELPGVQDTARAKEILGATATLEFREVDDKADLAAAAAGRAPAGSEIKFDRNGRPVVLKKR
VILGGSSITDASSSADEYGRPQVNISLDSEGGNKMSAFSKKNIGKLMATVFAEYKDSGKRSPEGKVILTKHEEVINQATI
QSALGRNFRITGIDSPAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVAVMLFTVLYYRKFGMI
ANIALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREELREGKNPQQAIHQGYANAFSTIADANI
TTLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAIVGTRCIVNLLYGGKRINKLSI

Sequences:

>Translated_617_residues
MLNRYPLWKYLMVMLTIAVAALYALPNIYGEDPAIQITGARGASVDMSTLDAVTDALNKAQLSQKSIALENGSILVRFND
TDTQISARDIISEALGKDKIVALNLAPSTPYWLESIGAAPMKLGLDLRGGVHFLMEVDMDAAMEKLVSQQEEAFRSDLRD
EKIRYRAIRPLSDAVEVTLRDAEQLAQTKLLLESKHRDMTFTTSESDGRFVLVAKFTEARLQEIRNYAVEQNITILRNRV
NELGVAEPLVQRQGATRIVVELPGVQDTARAKEILGATATLEFREVDDKADLAAAAAGRAPAGSEIKFDRNGRPVVLKKR
VILGGSSITDASSSADEYGRPQVNISLDSEGGNKMSAFSKKNIGKLMATVFAEYKDSGKRSPEGKVILTKHEEVINQATI
QSALGRNFRITGIDSPAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVAVMLFTVLYYRKFGMI
ANIALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREELREGKNPQQAIHQGYANAFSTIADANI
TTLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAIVGTRCIVNLLYGGKRINKLSI
>Mature_617_residues
MLNRYPLWKYLMVMLTIAVAALYALPNIYGEDPAIQITGARGASVDMSTLDAVTDALNKAQLSQKSIALENGSILVRFND
TDTQISARDIISEALGKDKIVALNLAPSTPYWLESIGAAPMKLGLDLRGGVHFLMEVDMDAAMEKLVSQQEEAFRSDLRD
EKIRYRAIRPLSDAVEVTLRDAEQLAQTKLLLESKHRDMTFTTSESDGRFVLVAKFTEARLQEIRNYAVEQNITILRNRV
NELGVAEPLVQRQGATRIVVELPGVQDTARAKEILGATATLEFREVDDKADLAAAAAGRAPAGSEIKFDRNGRPVVLKKR
VILGGSSITDASSSADEYGRPQVNISLDSEGGNKMSAFSKKNIGKLMATVFAEYKDSGKRSPEGKVILTKHEEVINQATI
QSALGRNFRITGIDSPAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVAVMLFTVLYYRKFGMI
ANIALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREELREGKNPQQAIHQGYANAFSTIADANI
TTLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAIVGTRCIVNLLYGGKRINKLSI

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=618, Percent_Identity=62.621359223301, Blast_Score=785, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 66843; Mature: 66843

Theoretical pI: Translated: 7.60; Mature: 7.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNRYPLWKYLMVMLTIAVAALYALPNIYGEDPAIQITGARGASVDMSTLDAVTDALNKA
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHH
QLSQKSIALENGSILVRFNDTDTQISARDIISEALGKDKIVALNLAPSTPYWLESIGAAP
HHHHHHEEEECCEEEEEECCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHCCCCC
MKLGLDLRGGVHFLMEVDMDAAMEKLVSQQEEAFRSDLRDEKIRYRAIRPLSDAVEVTLR
HHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
DAEQLAQTKLLLESKHRDMTFTTSESDGRFVLVAKFTEARLQEIRNYAVEQNITILRNRV
HHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEHHHHHHHHHHHHHHHCCHHHHHHHH
NELGVAEPLVQRQGATRIVVELPGVQDTARAKEILGATATLEFREVDDKADLAAAAAGRA
HHCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCHHEEEEHCCCCHHHHHHHHCCCC
PAGSEIKFDRNGRPVVLKKRVILGGSSITDASSSADEYGRPQVNISLDSEGGNKMSAFSK
CCCCCEEECCCCCEEEEEEEEEECCCCCCCCCCCHHHCCCCEEEEEEECCCCCCHHHHHH
KNIGKLMATVFAEYKDSGKRSPEGKVILTKHEEVINQATIQSALGRNFRITGIDSPAEAH
HHHHHHHHHHHHHHHHCCCCCCCCCEEEECHHHHHHHHHHHHHHCCCEEEECCCCCCHHH
NLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVAVMLFTVLYYRKFGMI
HHHHHHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ANIALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREELREGKNP
HHHHHHHHHHHHHHHHHHCCCCCEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCH
QQAIHQGYANAFSTIADANITTLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAIVGTR
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHEEEEHHHHHHHHHHHHHHHHH
CIVNLLYGGKRINKLSI
HHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MLNRYPLWKYLMVMLTIAVAALYALPNIYGEDPAIQITGARGASVDMSTLDAVTDALNKA
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHH
QLSQKSIALENGSILVRFNDTDTQISARDIISEALGKDKIVALNLAPSTPYWLESIGAAP
HHHHHHEEEECCEEEEEECCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHCCCCC
MKLGLDLRGGVHFLMEVDMDAAMEKLVSQQEEAFRSDLRDEKIRYRAIRPLSDAVEVTLR
HHCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
DAEQLAQTKLLLESKHRDMTFTTSESDGRFVLVAKFTEARLQEIRNYAVEQNITILRNRV
HHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEHHHHHHHHHHHHHHHCCHHHHHHHH
NELGVAEPLVQRQGATRIVVELPGVQDTARAKEILGATATLEFREVDDKADLAAAAAGRA
HHCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCHHEEEEHCCCCHHHHHHHHCCCC
PAGSEIKFDRNGRPVVLKKRVILGGSSITDASSSADEYGRPQVNISLDSEGGNKMSAFSK
CCCCCEEECCCCCEEEEEEEEEECCCCCCCCCCCHHHCCCCEEEEEEECCCCCCHHHHHH
KNIGKLMATVFAEYKDSGKRSPEGKVILTKHEEVINQATIQSALGRNFRITGIDSPAEAH
HHHHHHHHHHHHHHHHCCCCCCCCCEEEECHHHHHHHHHHHHHHCCCEEEECCCCCCHHH
NLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVAVMLFTVLYYRKFGMI
HHHHHHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ANIALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREELREGKNP
HHHHHHHHHHHHHHHHHHCCCCCEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCH
QQAIHQGYANAFSTIADANITTLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAIVGTR
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHEEEEHHHHHHHHHHHHHHHHH
CIVNLLYGGKRINKLSI
HHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]