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The map label for this gene is rdgC

Identifier: 227080897

GI number: 227080897

Start: 728566

End: 729480

Strand: Reverse

Name: rdgC

Synonym: VCM66_0676

Alternate gene names: 227080897

Gene position: 729480-728566 (Counterclockwise)

Preceding gene: 227080901

Following gene: 227080896

Centisome position: 25.22

GC content: 49.51

Gene sequence:

>915_bases
ATGTGGTTTAAAAACTGTATGGTGTATCGCGTTAATCGCGAGGTTAACTTCAATGCCGATCAGCTGGAAAAACAGCTGGC
CGAATTTCGTTTTACGCCTTGCGGCAGTCAAGATAAACAGAAGTTTGGCTGGGTTTCCGCACTGGGTAAACACGGCGACA
TGATGACCCACGTCAGTGAAAACCGCATTTTAGTCTGCGCGAAACGTGAAGAAAAAATGCTCCCCGCTTCGGTGATCAAA
GATTCGCTCAATGCCAAAGTCGAAGAGATGGAAGCCGAAGAAGGCCGCCCACTGAAGAAAAAAGAAAAAGACGCGCTGAA
AGAAGACATCGTCATCGATTTACTGCCACGCGCCTTCAGCAAAAGCCAACTCACGTTTGTGCTGATCATGCCAACCGAAG
GCTTAATTCTAGTCGATGCAGGCAGCTACAAAAAAGCCGAAGATGTGCTCTCGCTACTGCGTAAAACCATGGGTAGTCTA
CCGGTGGTGCCTGCTATTCCTGAAATAGCGGTCGAAACGACGCTGACGCAATGGGTGAAAGATGGCAATCTGCCCCAAGG
CTTTAGCCTGATGGAAGAAGCGGAGCTCAAATCGTTACTCGATGATGGAGCCACCATTCGCTGCAAAAAACAAGAGCTGA
GCAGCGATGAAATCCTGAGCCACATTCAAGCCAATAAAGTGGTCACCAAGCTGGCGATCAACTGGCAAGACCGAATTCGT
TTTGTCCTCGCGGAAGATTGCAGCATCAAGCGCCTAGCGTACAGCGATGAACTTAAAGAGCAGAATGATGACATCCCACA
CGAAGATCGCGCAGCCCGTCTTGATGCCGATTTCTCCCTGTTGTGCGGAGAAATGTCGGTTTTCCTGCCGGATCTATTCA
ATGCATTAGGTGGCCTGCCTCACCCTGAAGCCTAA

Upstream 100 bases:

>100_bases
GTAACAACTGGAAGATGTGCCTCTTTTTTTGCATTCGGGGTAAGACATTCTCAGCATCTTCCCCTATCATGTCTGGCTTT
CTAACCAAGGGAAAACAACA

Downstream 100 bases:

>100_bases
TCGTGGACTCAATTTCACCACCTCGGCGTAAATGAGGTGGTGAGAGTTTCACTATGCAGAGTAGGGTTTTTGACGTAAAA
TTTGCGCCCTTTCCAATACC

Product: recombination associated protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 304

Protein sequence:

>304_residues
MWFKNCMVYRVNREVNFNADQLEKQLAEFRFTPCGSQDKQKFGWVSALGKHGDMMTHVSENRILVCAKREEKMLPASVIK
DSLNAKVEEMEAEEGRPLKKKEKDALKEDIVIDLLPRAFSKSQLTFVLIMPTEGLILVDAGSYKKAEDVLSLLRKTMGSL
PVVPAIPEIAVETTLTQWVKDGNLPQGFSLMEEAELKSLLDDGATIRCKKQELSSDEILSHIQANKVVTKLAINWQDRIR
FVLAEDCSIKRLAYSDELKEQNDDIPHEDRAARLDADFSLLCGEMSVFLPDLFNALGGLPHPEA

Sequences:

>Translated_304_residues
MWFKNCMVYRVNREVNFNADQLEKQLAEFRFTPCGSQDKQKFGWVSALGKHGDMMTHVSENRILVCAKREEKMLPASVIK
DSLNAKVEEMEAEEGRPLKKKEKDALKEDIVIDLLPRAFSKSQLTFVLIMPTEGLILVDAGSYKKAEDVLSLLRKTMGSL
PVVPAIPEIAVETTLTQWVKDGNLPQGFSLMEEAELKSLLDDGATIRCKKQELSSDEILSHIQANKVVTKLAINWQDRIR
FVLAEDCSIKRLAYSDELKEQNDDIPHEDRAARLDADFSLLCGEMSVFLPDLFNALGGLPHPEA
>Mature_304_residues
MWFKNCMVYRVNREVNFNADQLEKQLAEFRFTPCGSQDKQKFGWVSALGKHGDMMTHVSENRILVCAKREEKMLPASVIK
DSLNAKVEEMEAEEGRPLKKKEKDALKEDIVIDLLPRAFSKSQLTFVLIMPTEGLILVDAGSYKKAEDVLSLLRKTMGSL
PVVPAIPEIAVETTLTQWVKDGNLPQGFSLMEEAELKSLLDDGATIRCKKQELSSDEILSHIQANKVVTKLAINWQDRIR
FVLAEDCSIKRLAYSDELKEQNDDIPHEDRAARLDADFSLLCGEMSVFLPDLFNALGGLPHPEA

Specific function: May be involved in recombination

COG id: COG2974

COG function: function code L; DNA recombination-dependent growth factor C

Gene ontology:

Cell location: Cytoplasm, nucleoid

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rdgC family

Homologues:

Organism=Escherichia coli, GI1786592, Length=298, Percent_Identity=55.7046979865772, Blast_Score=356, Evalue=1e-100,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RDGC_VIBCH (Q9KU12)

Other databases:

- EMBL:   AE003852
- PIR:   G82288
- RefSeq:   NP_230367.1
- ProteinModelPortal:   Q9KU12
- SMR:   Q9KU12
- GeneID:   2615727
- GenomeReviews:   AE003852_GR
- KEGG:   vch:VC0718
- TIGR:   VC_0718
- HOGENOM:   HBG537402
- OMA:   PCSSQDI
- ProtClustDB:   PRK00321
- GO:   GO:0005737
- GO:   GO:0009295
- HAMAP:   MF_00194
- InterPro:   IPR007476

Pfam domain/function: PF04381 RdgC

EC number: NA

Molecular weight: Translated: 34266; Mature: 34266

Theoretical pI: Translated: 4.97; Mature: 4.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWFKNCMVYRVNREVNFNADQLEKQLAEFRFTPCGSQDKQKFGWVSALGKHGDMMTHVSE
CCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCEEEEECC
NRILVCAKREEKMLPASVIKDSLNAKVEEMEAEEGRPLKKKEKDALKEDIVIDLLPRAFS
CCEEEEECCCCCCCCHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCC
KSQLTFVLIMPTEGLILVDAGSYKKAEDVLSLLRKTMGSLPVVPAIPEIAVETTLTQWVK
CCCEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
DGNLPQGFSLMEEAELKSLLDDGATIRCKKQELSSDEILSHIQANKVVTKLAINWQDRIR
CCCCCCCHHHHHHHHHHHHHCCCCEEEEEHHHCCHHHHHHHHHHHHHHHHHEECHHHHEE
FVLAEDCSIKRLAYSDELKEQNDDIPHEDRAARLDADFSLLCGEMSVFLPDLFNALGGLP
EEEECCCCCCHHHHHHHHHHCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCC
HPEA
CCCC
>Mature Secondary Structure
MWFKNCMVYRVNREVNFNADQLEKQLAEFRFTPCGSQDKQKFGWVSALGKHGDMMTHVSE
CCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCEEEEECC
NRILVCAKREEKMLPASVIKDSLNAKVEEMEAEEGRPLKKKEKDALKEDIVIDLLPRAFS
CCEEEEECCCCCCCCHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCC
KSQLTFVLIMPTEGLILVDAGSYKKAEDVLSLLRKTMGSLPVVPAIPEIAVETTLTQWVK
CCCEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
DGNLPQGFSLMEEAELKSLLDDGATIRCKKQELSSDEILSHIQANKVVTKLAINWQDRIR
CCCCCCCHHHHHHHHHHHHHCCCCEEEEEHHHCCHHHHHHHHHHHHHHHHHEECHHHHEE
FVLAEDCSIKRLAYSDELKEQNDDIPHEDRAARLDADFSLLCGEMSVFLPDLFNALGGLP
EEEECCCCCCHHHHHHHHHHCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCC
HPEA
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10952301