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The map label for this gene is yhcM [H]

Identifier: 227080751

GI number: 227080751

Start: 559175

End: 560278

Strand: Direct

Name: yhcM [H]

Synonym: VCM66_0526

Alternate gene names: 227080751

Gene position: 559175-560278 (Clockwise)

Preceding gene: 227080747

Following gene: 227080753

Centisome position: 19.33

GC content: 44.93

Gene sequence:

>1104_bases
ATGACTCCGAAGCAGCGATACGAAAAAGATTTACAACGCACTGATTTTTATAGTGATGAAGCACAGGCACGTGCCGTCGA
TGCCTTAGATAATTTGTATCACCAATGGCTAAATTACCTCAATCAGCCAGTGGTACGACCTTCTGTATGGCAAAAGCTCA
TCGGTAAGAAGCCAACAGTGACGCAACCGCCACAAGGTCTCTATATGTGGGGAGGTGTCGGACGCGGTAAAACCTATCTT
ATGGATACTTTTTTTGAAGCCTTGCCGACAGAAAAGAAGCTTAGGGTTCATTTTCATCGCTTTATGTATCGGGTGCACGA
TGAATTACGCACTTTATCAGACGTCAGTGATCCGCTTGAAATTGTGGCTGATCGCTTTTGTGCTGAGGCAAACATTATCT
GTTTTGATGAGTTTTTCGTCTCGGATATTACCGATGCGATGATCCTTGGAACTCTGTTCGAGGCCTTATTTAGACGCGGT
ATCGTATTGGTAGCCACTTCGAATATTGCCCCCAAGGATTTGTACCGCAATGGGTTACAGCGAGCCCGATTCCTACCTGC
AATTGCGTTGGTGGAAACGCATTGTCAGATCCTAAATGTAGATAGTGGTGTCGATTATCGTTTGAGAACCTTACAGCAAG
CGGAAATTTATCATTACCCTTTAGACAGTAAAGCGACCGATAACCTACAGCGTTACTTCCAGCAGTTGATCAGCTCAGAG
CAGACTCCAGAGACGCAGATCGACGTGAATCACCGAATGATTACGGTTGAAGCGGCAGGAGACGGAGTATTGTATGCGAC
CTTTGCTCAGTTATGCCAAACGGCACGTAGCCAAAATGACTATATTGAGCTGTCGAAAATTTATCACACCGTGCTGCTGG
CGGATGTCAAACAGATGAACAAAAGTAGCGATGATGCCGCGAGGCGCTTTATTGCGCTGGTGGATGAGTTTTATGAGCGA
CATGTAAAGTTAATTATTTCTGCTGAAGTGCCCCTTACCGATCTGTATACCGATGGTTTGTTAGAATTTGAATTTAAACG
CTGCCAATCACGCTTAATTGAAATGCAAAGTCATGATTACTTAGCGAAGGAGCACTTGGGCTGA

Upstream 100 bases:

>100_bases
GTACGAGGGACATGTTACTATGAGACCCAAGTTGGATAAAGCAAAATGCACGTCAGCTATTTTGCGTTTATGGCTCTCCT
TGTAACTGTAGTAGACCAAG

Downstream 100 bases:

>100_bases
GCACAAAATGGCTTCCCCAGTAAGGCGTGGATTTTTTTTCTCTTTTCATGCAAAAAAAGGTGATTTTTTCTGCGCCCTTC
TCTATAATCCTGCGACCCAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 367; Mature: 366

Protein sequence:

>367_residues
MTPKQRYEKDLQRTDFYSDEAQARAVDALDNLYHQWLNYLNQPVVRPSVWQKLIGKKPTVTQPPQGLYMWGGVGRGKTYL
MDTFFEALPTEKKLRVHFHRFMYRVHDELRTLSDVSDPLEIVADRFCAEANIICFDEFFVSDITDAMILGTLFEALFRRG
IVLVATSNIAPKDLYRNGLQRARFLPAIALVETHCQILNVDSGVDYRLRTLQQAEIYHYPLDSKATDNLQRYFQQLISSE
QTPETQIDVNHRMITVEAAGDGVLYATFAQLCQTARSQNDYIELSKIYHTVLLADVKQMNKSSDDAARRFIALVDEFYER
HVKLIISAEVPLTDLYTDGLLEFEFKRCQSRLIEMQSHDYLAKEHLG

Sequences:

>Translated_367_residues
MTPKQRYEKDLQRTDFYSDEAQARAVDALDNLYHQWLNYLNQPVVRPSVWQKLIGKKPTVTQPPQGLYMWGGVGRGKTYL
MDTFFEALPTEKKLRVHFHRFMYRVHDELRTLSDVSDPLEIVADRFCAEANIICFDEFFVSDITDAMILGTLFEALFRRG
IVLVATSNIAPKDLYRNGLQRARFLPAIALVETHCQILNVDSGVDYRLRTLQQAEIYHYPLDSKATDNLQRYFQQLISSE
QTPETQIDVNHRMITVEAAGDGVLYATFAQLCQTARSQNDYIELSKIYHTVLLADVKQMNKSSDDAARRFIALVDEFYER
HVKLIISAEVPLTDLYTDGLLEFEFKRCQSRLIEMQSHDYLAKEHLG
>Mature_366_residues
TPKQRYEKDLQRTDFYSDEAQARAVDALDNLYHQWLNYLNQPVVRPSVWQKLIGKKPTVTQPPQGLYMWGGVGRGKTYLM
DTFFEALPTEKKLRVHFHRFMYRVHDELRTLSDVSDPLEIVADRFCAEANIICFDEFFVSDITDAMILGTLFEALFRRGI
VLVATSNIAPKDLYRNGLQRARFLPAIALVETHCQILNVDSGVDYRLRTLQQAEIYHYPLDSKATDNLQRYFQQLISSEQ
TPETQIDVNHRMITVEAAGDGVLYATFAQLCQTARSQNDYIELSKIYHTVLLADVKQMNKSSDDAARRFIALVDEFYERH
VKLIISAEVPLTDLYTDGLLEFEFKRCQSRLIEMQSHDYLAKEHLG

Specific function: Unknown

COG id: COG1485

COG function: function code R; Predicted ATPase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AFG1 ATPase family [H]

Homologues:

Organism=Homo sapiens, GI21918872, Length=405, Percent_Identity=34.0740740740741, Blast_Score=229, Evalue=3e-60,
Organism=Escherichia coli, GI1789627, Length=372, Percent_Identity=52.4193548387097, Blast_Score=396, Evalue=1e-112,
Organism=Caenorhabditis elegans, GI17505769, Length=350, Percent_Identity=35.7142857142857, Blast_Score=224, Evalue=7e-59,
Organism=Saccharomyces cerevisiae, GI6320783, Length=412, Percent_Identity=27.9126213592233, Blast_Score=152, Evalue=1e-37,
Organism=Drosophila melanogaster, GI20129913, Length=423, Percent_Identity=34.51536643026, Blast_Score=209, Evalue=2e-54,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005654 [H]

Pfam domain/function: PF03969 AFG1_ATPase [H]

EC number: NA

Molecular weight: Translated: 42496; Mature: 42365

Theoretical pI: Translated: 5.97; Mature: 5.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPKQRYEKDLQRTDFYSDEAQARAVDALDNLYHQWLNYLNQPVVRPSVWQKLIGKKPTV
CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCC
TQPPQGLYMWGGVGRGKTYLMDTFFEALPTEKKLRVHFHRFMYRVHDELRTLSDVSDPLE
CCCCCCEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
IVADRFCAEANIICFDEFFVSDITDAMILGTLFEALFRRGIVLVATSNIAPKDLYRNGLQ
HHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHH
RARFLPAIALVETHCQILNVDSGVDYRLRTLQQAEIYHYPLDSKATDNLQRYFQQLISSE
HHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHCCC
QTPETQIDVNHRMITVEAAGDGVLYATFAQLCQTARSQNDYIELSKIYHTVLLADVKQMN
CCCCCEEECCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHC
KSSDDAARRFIALVDEFYERHVKLIISAEVPLTDLYTDGLLEFEFKRCQSRLIEMQSHDY
CCCHHHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCCH
LAKEHLG
HHHHCCC
>Mature Secondary Structure 
TPKQRYEKDLQRTDFYSDEAQARAVDALDNLYHQWLNYLNQPVVRPSVWQKLIGKKPTV
CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCC
TQPPQGLYMWGGVGRGKTYLMDTFFEALPTEKKLRVHFHRFMYRVHDELRTLSDVSDPLE
CCCCCCEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
IVADRFCAEANIICFDEFFVSDITDAMILGTLFEALFRRGIVLVATSNIAPKDLYRNGLQ
HHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHH
RARFLPAIALVETHCQILNVDSGVDYRLRTLQQAEIYHYPLDSKATDNLQRYFQQLISSE
HHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHCCC
QTPETQIDVNHRMITVEAAGDGVLYATFAQLCQTARSQNDYIELSKIYHTVLLADVKQMN
CCCCCEEECCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHC
KSSDDAARRFIALVDEFYERHVKLIISAEVPLTDLYTDGLLEFEFKRCQSRLIEMQSHDY
CCCHHHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCCH
LAKEHLG
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]