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The map label for this gene is ygaD [C]

Identifier: 227080725

GI number: 227080725

Start: 531503

End: 532009

Strand: Direct

Name: ygaD [C]

Synonym: VCM66_0500

Alternate gene names: 227080725

Gene position: 531503-532009 (Clockwise)

Preceding gene: 227080724

Following gene: 227080726

Centisome position: 18.38

GC content: 51.48

Gene sequence:

>507_bases
ATGAAAACACTGCATTCCTTGAGTGAGCAGTTAGGGGGGCTACTGGCTAACCAGCAGCAGATCCTCGCTAGCGCAGAATC
TTGCACCGGCGGTGGTGTGGCTTATTGGGTGACTGAAGTGGCCGGAAGTTCGGCATGGTTTGATCGTAGTTTCGTGACTT
ACAGTAATGAAGCCAAACAAGAAATGCTCGGTGTTCGGCAAGCAACATTACAACAATTTGGTGCGGTTTCTGAACAGACC
GTTGAAGAGATGGCGCTTGGTGCGCTCTTGCATTCAAAGGCTACGCTAGCGGCTGCGATTAGTGGCATTGCTGGCCCCGG
TGGCGGTAGTGCAGAAAAGCCAGTTGGCACCGTCTGCTTTGGCTTTGCTAGTGTTCAAGGTTGGCTCAAAGTGGAAACGT
GCCACTTTACGGGTGATCGCGAACAAGTGCGTCAGCAAGCCATAGCGCATGTGTTGCAAAGCTTGATTGAGCATCTCGCA
GCAGATCAGGTTCAAAACGTTAACTGA

Upstream 100 bases:

>100_bases
ACGATTGCAATTAACGTCTAATTCGGTAGTTTAGCCTGCAGTTTTACCGAGCAAAATGAAACACTAGTGACACAATGAAA
CAGAAGCGAGAGGCAAGCGT

Downstream 100 bases:

>100_bases
GCCAAACTTTTTTCTATACAGGGGTGGACACTGTACAAATCAACAGTATAATGAACCCCAACATGACAAATCAGCGTCGA
CCCGATTTCGACACAATTAC

Product: CinA-related protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 168; Mature: 168

Protein sequence:

>168_residues
MKTLHSLSEQLGGLLANQQQILASAESCTGGGVAYWVTEVAGSSAWFDRSFVTYSNEAKQEMLGVRQATLQQFGAVSEQT
VEEMALGALLHSKATLAAAISGIAGPGGGSAEKPVGTVCFGFASVQGWLKVETCHFTGDREQVRQQAIAHVLQSLIEHLA
ADQVQNVN

Sequences:

>Translated_168_residues
MKTLHSLSEQLGGLLANQQQILASAESCTGGGVAYWVTEVAGSSAWFDRSFVTYSNEAKQEMLGVRQATLQQFGAVSEQT
VEEMALGALLHSKATLAAAISGIAGPGGGSAEKPVGTVCFGFASVQGWLKVETCHFTGDREQVRQQAIAHVLQSLIEHLA
ADQVQNVN
>Mature_168_residues
MKTLHSLSEQLGGLLANQQQILASAESCTGGGVAYWVTEVAGSSAWFDRSFVTYSNEAKQEMLGVRQATLQQFGAVSEQT
VEEMALGALLHSKATLAAAISGIAGPGGGSAEKPVGTVCFGFASVQGWLKVETCHFTGDREQVRQQAIAHVLQSLIEHLA
ADQVQNVN

Specific function: Unknown

COG id: COG1546

COG function: function code R; Uncharacterized protein (competence- and mitomycin-induced)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CinA family [H]

Homologues:

Organism=Escherichia coli, GI1789052, Length=156, Percent_Identity=56.4102564102564, Blast_Score=167, Evalue=4e-43,
Organism=Escherichia coli, GI1787818, Length=147, Percent_Identity=36.0544217687075, Blast_Score=91, Evalue=3e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008136 [H]

Pfam domain/function: PF02464 CinA [H]

EC number: NA

Molecular weight: Translated: 17720; Mature: 17720

Theoretical pI: Translated: 5.13; Mature: 5.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTLHSLSEQLGGLLANQQQILASAESCTGGGVAYWVTEVAGSSAWFDRSFVTYSNEAKQ
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHCCCHHHCCHHHHH
EMLGVRQATLQQFGAVSEQTVEEMALGALLHSKATLAAAISGIAGPGGGSAEKPVGTVCF
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH
GFASVQGWLKVETCHFTGDREQVRQQAIAHVLQSLIEHLAADQVQNVN
HHHHHCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKTLHSLSEQLGGLLANQQQILASAESCTGGGVAYWVTEVAGSSAWFDRSFVTYSNEAKQ
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHCCCHHHCCHHHHH
EMLGVRQATLQQFGAVSEQTVEEMALGALLHSKATLAAAISGIAGPGGGSAEKPVGTVCF
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHH
GFASVQGWLKVETCHFTGDREQVRQQAIAHVLQSLIEHLAADQVQNVN
HHHHHCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA