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The map label for this gene is ydgI [H]

Identifier: 227080644

GI number: 227080644

Start: 448379

End: 449785

Strand: Direct

Name: ydgI [H]

Synonym: VCM66_0418

Alternate gene names: 227080644

Gene position: 448379-449785 (Clockwise)

Preceding gene: 227080643

Following gene: 227080646

Centisome position: 15.5

GC content: 48.76

Gene sequence:

>1407_bases
ATGGATAAAAAACTGGGTTTAGGCTCTCTCACGGCGCTAGTGATTGGTTCAATGATTGGTGCGGGCGTGTTTAGCTTGCC
ACAAAATATGGCAGCGGTTGCCAGTCCACTGGCAGTGATGATCGGCTGGTCGATCACTGGGATCGGCATGATCTTTCTTG
CGCTCTCTTTTCAATATTTAGCCGTCAATAAACCCCATGTGAACAGTGGTGTGTTTGGTTTTGCTCGTGAAGGTTTTGGT
GATTTTGCCGGATTTTGCTCGGCGTGGGGCTACTGGTTTAGTGCCATGGTCGCGAACGTCTCTTATCTGGTGATTGTGTT
CAGTACTTTAGGACTGTTGTTTGATACGCCTGATCAGATTATCTTTGGCTCAGGTAATACTTGGTGGTCAATTGGTGGCG
CTTCTCTACTATTGTGGGCTGTTCACAGCTTAGTATTAAGAGGGGTGCAAACCGCCGCGCTGATCAATCTCATCACCACT
ATGACTAAAATGGTGCCTTTGCTACTTTTCATTGTGTCTGCGATTGCGGCGTTCAACTGGTCCACATTTAGCTTGGATTT
CGCAGGGCTCCATCACATTTCAGGCGCTGATCTGCTCGGTCAGGTCAAAGCGACCATGTTGATCACGGTTTGGGTTTTTG
TGGGGATTGAAGGTGCTGTGGTGGTATCAAGCCGAGCACGTCAGCGTAAAGACATCGGTCGCGCGACCATTCTTGGGTTA
CTCACGGCTCTGTCGATTTATGTCTTAGTCACGCTGTTGTCGATGGGCGTGATTCAAGTCAATCAGTTGGCGCAATACCC
GAATCCTTCTATGGCGCAAGTGTTGACTACGATTATTGGTCCTTGGGGTAAGTACATTATTGCGGTTGGGCTTTTGATCT
CGGTTTGCGGTGCGTTTTTGAGTTGGACGGTATTGGCTTCCGAAGCGCCTTTCCTTGCCGCCAAAGATAAGATGTTTCCC
CGCCATTTTGCCAAGCAGAATCAAGCGGGAAGTCCAGTTAATGCCTTGTTCTTAACCACACTCTGTATCCAAGTCTCCTT
GATCTTGGTGCGCTATACTTCCAGCACTTACGATAGCTTATTGATCTTTGCCTCAGAGATGATTTTAGTGCCGTATTTTC
TGGTGGGCGCTTTTACCCTTAAGCTTGCTCTGGAGCAAAGAGATCGAGGGAAGTTGCTATTGATTGGCTTTGGCGCAACG
GCTTATGGTCTATGGTTGCTGTATGCATCAGGTTTGCACTATTTGATGCTCTCAACCCTGTTGTATGTACCGGGCTTCGC
TTTCTATCTCAAAGCAAAGCGTGAGCAAGGTGTAAAAGCATTCTGCGGCCGAGAAATGGTCGGAGCCAGCACCCTACTGC
TGTTTGCCGTTGGGGCGGCAGGCATGCTTTGGCAAGGCGCTTGGTAA

Upstream 100 bases:

>100_bases
GTGGCCCTTCGGCTGTTGCAGGCGGATTTTCTCTTGTTTGTGACTGATGCTTGGAAGGGGAAGATGGCTTTTTACCTCTG
TTATTGGTGATTAAAAAATA

Downstream 100 bases:

>100_bases
AATAGCGTTGATGCCATAGTCGACATTGTCTAAAGCTCGGGACGGATAAAAGAAACCCCTCAAGCTCGTAGAGCTGAGGG
GTTTTTTAGTAAGAAAACGT

Product: arginine/ornithine antiporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 468; Mature: 468

Protein sequence:

>468_residues
MDKKLGLGSLTALVIGSMIGAGVFSLPQNMAAVASPLAVMIGWSITGIGMIFLALSFQYLAVNKPHVNSGVFGFAREGFG
DFAGFCSAWGYWFSAMVANVSYLVIVFSTLGLLFDTPDQIIFGSGNTWWSIGGASLLLWAVHSLVLRGVQTAALINLITT
MTKMVPLLLFIVSAIAAFNWSTFSLDFAGLHHISGADLLGQVKATMLITVWVFVGIEGAVVVSSRARQRKDIGRATILGL
LTALSIYVLVTLLSMGVIQVNQLAQYPNPSMAQVLTTIIGPWGKYIIAVGLLISVCGAFLSWTVLASEAPFLAAKDKMFP
RHFAKQNQAGSPVNALFLTTLCIQVSLILVRYTSSTYDSLLIFASEMILVPYFLVGAFTLKLALEQRDRGKLLLIGFGAT
AYGLWLLYASGLHYLMLSTLLYVPGFAFYLKAKREQGVKAFCGREMVGASTLLLFAVGAAGMLWQGAW

Sequences:

>Translated_468_residues
MDKKLGLGSLTALVIGSMIGAGVFSLPQNMAAVASPLAVMIGWSITGIGMIFLALSFQYLAVNKPHVNSGVFGFAREGFG
DFAGFCSAWGYWFSAMVANVSYLVIVFSTLGLLFDTPDQIIFGSGNTWWSIGGASLLLWAVHSLVLRGVQTAALINLITT
MTKMVPLLLFIVSAIAAFNWSTFSLDFAGLHHISGADLLGQVKATMLITVWVFVGIEGAVVVSSRARQRKDIGRATILGL
LTALSIYVLVTLLSMGVIQVNQLAQYPNPSMAQVLTTIIGPWGKYIIAVGLLISVCGAFLSWTVLASEAPFLAAKDKMFP
RHFAKQNQAGSPVNALFLTTLCIQVSLILVRYTSSTYDSLLIFASEMILVPYFLVGAFTLKLALEQRDRGKLLLIGFGAT
AYGLWLLYASGLHYLMLSTLLYVPGFAFYLKAKREQGVKAFCGREMVGASTLLLFAVGAAGMLWQGAW
>Mature_468_residues
MDKKLGLGSLTALVIGSMIGAGVFSLPQNMAAVASPLAVMIGWSITGIGMIFLALSFQYLAVNKPHVNSGVFGFAREGFG
DFAGFCSAWGYWFSAMVANVSYLVIVFSTLGLLFDTPDQIIFGSGNTWWSIGGASLLLWAVHSLVLRGVQTAALINLITT
MTKMVPLLLFIVSAIAAFNWSTFSLDFAGLHHISGADLLGQVKATMLITVWVFVGIEGAVVVSSRARQRKDIGRATILGL
LTALSIYVLVTLLSMGVIQVNQLAQYPNPSMAQVLTTIIGPWGKYIIAVGLLISVCGAFLSWTVLASEAPFLAAKDKMFP
RHFAKQNQAGSPVNALFLTTLCIQVSLILVRYTSSTYDSLLIFASEMILVPYFLVGAFTLKLALEQRDRGKLLLIGFGAT
AYGLWLLYASGLHYLMLSTLLYVPGFAFYLKAKREQGVKAFCGREMVGASTLLLFAVGAAGMLWQGAW

Specific function: Catalyzes an electroneutral exchange between arginine and ornithine to allow high-efficiency energy conversion in the arginine deiminase pathway [H]

COG id: COG0531

COG function: function code E; Amino acid transporters

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the amino acid-polyamine-organocation (APC) superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787890, Length=464, Percent_Identity=56.4655172413793, Blast_Score=509, Evalue=1e-145,
Organism=Escherichia coli, GI2367353, Length=426, Percent_Identity=27.2300469483568, Blast_Score=120, Evalue=3e-28,
Organism=Escherichia coli, GI1786908, Length=444, Percent_Identity=24.7747747747748, Blast_Score=99, Evalue=8e-22,
Organism=Escherichia coli, GI1790575, Length=380, Percent_Identity=23.6842105263158, Blast_Score=70, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002293
- InterPro:   IPR004754 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 50371; Mature: 50371

Theoretical pI: Translated: 9.72; Mature: 9.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKKLGLGSLTALVIGSMIGAGVFSLPQNMAAVASPLAVMIGWSITGIGMIFLALSFQYL
CCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
AVNKPHVNSGVFGFAREGFGDFAGFCSAWGYWFSAMVANVSYLVIVFSTLGLLFDTPDQI
CCCCCCCCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE
IFGSGNTWWSIGGASLLLWAVHSLVLRGVQTAALINLITTMTKMVPLLLFIVSAIAAFNW
EECCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
STFSLDFAGLHHISGADLLGQVKATMLITVWVFVGIEGAVVVSSRARQRKDIGRATILGL
CEEEEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHH
LTALSIYVLVTLLSMGVIQVNQLAQYPNPSMAQVLTTIIGPWGKYIIAVGLLISVCGAFL
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
SWTVLASEAPFLAAKDKMFPRHFAKQNQAGSPVNALFLTTLCIQVSLILVRYTSSTYDSL
HHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHH
LIFASEMILVPYFLVGAFTLKLALEQRDRGKLLLIGFGATAYGLWLLYASGLHYLMLSTL
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHH
LYVPGFAFYLKAKREQGVKAFCGREMVGASTLLLFAVGAAGMLWQGAW
HHHCCHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MDKKLGLGSLTALVIGSMIGAGVFSLPQNMAAVASPLAVMIGWSITGIGMIFLALSFQYL
CCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
AVNKPHVNSGVFGFAREGFGDFAGFCSAWGYWFSAMVANVSYLVIVFSTLGLLFDTPDQI
CCCCCCCCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE
IFGSGNTWWSIGGASLLLWAVHSLVLRGVQTAALINLITTMTKMVPLLLFIVSAIAAFNW
EECCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
STFSLDFAGLHHISGADLLGQVKATMLITVWVFVGIEGAVVVSSRARQRKDIGRATILGL
CEEEEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHH
LTALSIYVLVTLLSMGVIQVNQLAQYPNPSMAQVLTTIIGPWGKYIIAVGLLISVCGAFL
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
SWTVLASEAPFLAAKDKMFPRHFAKQNQAGSPVNALFLTTLCIQVSLILVRYTSSTYDSL
HHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHH
LIFASEMILVPYFLVGAFTLKLALEQRDRGKLLLIGFGATAYGLWLLYASGLHYLMLSTL
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHH
LYVPGFAFYLKAKREQGVKAFCGREMVGASTLLLFAVGAAGMLWQGAW
HHHCCHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]