Click here to switch to the map view.

The map label for this gene is ubiD

Identifier: 227080523

GI number: 227080523

Start: 305454

End: 307295

Strand: Direct

Name: ubiD

Synonym: VCM66_0294

Alternate gene names: 227080523

Gene position: 305454-307295 (Clockwise)

Preceding gene: 227080522

Following gene: 227080524

Centisome position: 10.56

GC content: 48.75

Gene sequence:

>1842_bases
ATGAATTTTAAGGACTTACGGGATTTTCTTGACTATTTAGAGCAACGTGGTGAGCTAAAACGTATTACCCATCCGATTGA
TCCGCATTATGAAATGACCGAGATCAGCGACCGGACGTTACGTGCTAAAGGCCCAGCGTTGTTGTTTGAAAATCCGCTAG
GTTACGACTTTCCAGTGCTAACCAATTTGTTTGGTACGCCAGAACGCGTTGCTATGGGCATGGGGCGACAGCAGGTTCAA
GAGCTGCGTGATGTCGGTCAGTGGTTGGCTTATCTTAAAGAGCCAGAACCGCCTCGTGGTTTAAAAGAGCTGATTGAAAA
GCTGCCCGTTTTTAAACAAGTGCTCAATATGCCAGTTAAGCGCTTGCGTCGTGCTCCTTGCCAAGAAATCGTGTGGCAGG
GTGATGCGGTTGATCTCGATAAAATCCCTGTGATGAGCTGCTGGCCGGACGATGTTGCACCACTTTTAACTTGGGGTTTA
ACCATTACGCGTGGCCCACATAAAAAGCGCCAAAACCTTGGGATCTATCGTCAGCAAAAAATCGCCCGTAATAAAGTCAT
CATGCGTTGGTTAGCCCATCGCGGAGGGGCATTAGACTTGCGGGATTGGATGGAAAAACATCCCGGAGAGCCTTTTCCTG
TCAGCGTGGCGTTTGGTGCCGATCCGGCGACCATTCTCGGTGCAGTAACACCCGTCCCAGATACCTTATCTGAATACGCG
TTTGCTGGACTGTTGCGTGGCAGTCGTACTGAAGTGGTCAAGTCGATCAGTAACGATCTGGAAGTGCCCGCAAGTGCTGA
AATCGTGCTCGAAGGCTATATCGATCCTAACGAATTTGCAGATGAAGGTCCTTATGGTGACCACACGGGTTATTACAACG
AGGTTGAGCGCCATCATGTGTTCACTGTCACTCATGTGACCATGCGTAATAAGCCGATTTATCACAGCACCTATACAGGG
CGTCCGCCCGATGAACCCGCCGTGCTTGGTGTGGCGCTTAACGAAGTCTTCGTACCTATCTTGCAAAAGCAGTTTCCTGA
AATTGCCGATTTTTATCTGCCGCCAGAAGGCTGCTCGTATCGCATGGCGATAGTGACACTTAAGAAACAGTATCCGGGAC
ACGCTAAGCGGGTGATGCTGGGTGTGTGGTCATTCCTACGTCAATTTATGTACACCAAGTTTGTGATTGTGTGTGATGAA
CAAGTGAATGCGCGCGATTGGCCACAAGTGATTGCCGCTATGGTCAATCACATGTCGCCTCTGCGCGATACTCTATTTAT
TGAGCATACGCCGATTGACTCGCTGGATTTTGCTTCACCAGTGGTGGGTTTAGGCTCAAAAATCGGTTTGGATGCCACCG
CCAAATGGCCTGCAGAGCTGGCGGTTTCTAATTCTGACCAGAGTGACAAGACAACGGAACTTTCACTGGAAGCGCTAAAA
GCCTGCTTGAGTGATGAAGCGGATGTGTTGGATGTTGCATTACCGGAGGCGGCGAATGATAAGTTGGTTCTTCTACTTAT
TAATAAGCAGGAAGCAGGGCAGGCACAGCAACTGTTACAGCGTGTAGTCGATAAACTCAATGGTGACTCGCCGCTTAAGT
TTGTGATCTTGTGCGATGATGACGTGAATATCCATGACTGGAATGATGTGATCTGGGCAATGACCACACGCATGGATCCG
GCACGTGATAGCTTACGAATCGTTGGCCAAGATTTGATCTGCTTTGATGCAACCAATAAACTGCCTGACGAAGTCGAACG
TGAATGGGGTACTCCGATCCGAAAAGATCCTAAGCTAGTCGCGAAAATCGATTCGTTATGGGATGAGTTAGGCATTGTAT
GA

Upstream 100 bases:

>100_bases
AGCGGTACTGAATCCATAACCAACAAATGTAAGAAAATGGCGCAGAACAATCTTGAGGTTTGTTATACTGCCGCTATCGC
TGTCAACGAGTAGTAGACCT

Downstream 100 bases:

>100_bases
CCTATACCGTCCGCATCGTGCCTAATGATAGACAATTTATAATTCACTCAGGTGAAACGGTGCTTGATGCTGCGCTCAAC
CAGCAAATAGCCTTTCCCCA

Product: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase

Products: NA

Alternate protein names: Polyprenyl p-hydroxybenzoate decarboxylase

Number of amino acids: Translated: 613; Mature: 613

Protein sequence:

>613_residues
MNFKDLRDFLDYLEQRGELKRITHPIDPHYEMTEISDRTLRAKGPALLFENPLGYDFPVLTNLFGTPERVAMGMGRQQVQ
ELRDVGQWLAYLKEPEPPRGLKELIEKLPVFKQVLNMPVKRLRRAPCQEIVWQGDAVDLDKIPVMSCWPDDVAPLLTWGL
TITRGPHKKRQNLGIYRQQKIARNKVIMRWLAHRGGALDLRDWMEKHPGEPFPVSVAFGADPATILGAVTPVPDTLSEYA
FAGLLRGSRTEVVKSISNDLEVPASAEIVLEGYIDPNEFADEGPYGDHTGYYNEVERHHVFTVTHVTMRNKPIYHSTYTG
RPPDEPAVLGVALNEVFVPILQKQFPEIADFYLPPEGCSYRMAIVTLKKQYPGHAKRVMLGVWSFLRQFMYTKFVIVCDE
QVNARDWPQVIAAMVNHMSPLRDTLFIEHTPIDSLDFASPVVGLGSKIGLDATAKWPAELAVSNSDQSDKTTELSLEALK
ACLSDEADVLDVALPEAANDKLVLLLINKQEAGQAQQLLQRVVDKLNGDSPLKFVILCDDDVNIHDWNDVIWAMTTRMDP
ARDSLRIVGQDLICFDATNKLPDEVEREWGTPIRKDPKLVAKIDSLWDELGIV

Sequences:

>Translated_613_residues
MNFKDLRDFLDYLEQRGELKRITHPIDPHYEMTEISDRTLRAKGPALLFENPLGYDFPVLTNLFGTPERVAMGMGRQQVQ
ELRDVGQWLAYLKEPEPPRGLKELIEKLPVFKQVLNMPVKRLRRAPCQEIVWQGDAVDLDKIPVMSCWPDDVAPLLTWGL
TITRGPHKKRQNLGIYRQQKIARNKVIMRWLAHRGGALDLRDWMEKHPGEPFPVSVAFGADPATILGAVTPVPDTLSEYA
FAGLLRGSRTEVVKSISNDLEVPASAEIVLEGYIDPNEFADEGPYGDHTGYYNEVERHHVFTVTHVTMRNKPIYHSTYTG
RPPDEPAVLGVALNEVFVPILQKQFPEIADFYLPPEGCSYRMAIVTLKKQYPGHAKRVMLGVWSFLRQFMYTKFVIVCDE
QVNARDWPQVIAAMVNHMSPLRDTLFIEHTPIDSLDFASPVVGLGSKIGLDATAKWPAELAVSNSDQSDKTTELSLEALK
ACLSDEADVLDVALPEAANDKLVLLLINKQEAGQAQQLLQRVVDKLNGDSPLKFVILCDDDVNIHDWNDVIWAMTTRMDP
ARDSLRIVGQDLICFDATNKLPDEVEREWGTPIRKDPKLVAKIDSLWDELGIV
>Mature_613_residues
MNFKDLRDFLDYLEQRGELKRITHPIDPHYEMTEISDRTLRAKGPALLFENPLGYDFPVLTNLFGTPERVAMGMGRQQVQ
ELRDVGQWLAYLKEPEPPRGLKELIEKLPVFKQVLNMPVKRLRRAPCQEIVWQGDAVDLDKIPVMSCWPDDVAPLLTWGL
TITRGPHKKRQNLGIYRQQKIARNKVIMRWLAHRGGALDLRDWMEKHPGEPFPVSVAFGADPATILGAVTPVPDTLSEYA
FAGLLRGSRTEVVKSISNDLEVPASAEIVLEGYIDPNEFADEGPYGDHTGYYNEVERHHVFTVTHVTMRNKPIYHSTYTG
RPPDEPAVLGVALNEVFVPILQKQFPEIADFYLPPEGCSYRMAIVTLKKQYPGHAKRVMLGVWSFLRQFMYTKFVIVCDE
QVNARDWPQVIAAMVNHMSPLRDTLFIEHTPIDSLDFASPVVGLGSKIGLDATAKWPAELAVSNSDQSDKTTELSLEALK
ACLSDEADVLDVALPEAANDKLVLLLINKQEAGQAQQLLQRVVDKLNGDSPLKFVILCDDDVNIHDWNDVIWAMTTRMDP
ARDSLRIVGQDLICFDATNKLPDEVEREWGTPIRKDPKLVAKIDSLWDELGIV

Specific function: Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol

COG id: COG0043

COG function: function code H; 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ubiD family

Homologues:

Organism=Escherichia coli, GI1790277, Length=459, Percent_Identity=76.9063180827887, Blast_Score=749, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6320748, Length=436, Percent_Identity=25.6880733944954, Blast_Score=111, Evalue=3e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): UBID_VIBCH (Q9KV48)

Other databases:

- EMBL:   AE003852
- PIR:   G82338
- RefSeq:   NP_229964.1
- ProteinModelPortal:   Q9KV48
- GeneID:   2614979
- GenomeReviews:   AE003852_GR
- KEGG:   vch:VC0309
- TIGR:   VC_0309
- HOGENOM:   HBG564733
- OMA:   LNRIYTP
- ProtClustDB:   CLSK873932
- HAMAP:   MF_01636
- InterPro:   IPR002830
- InterPro:   IPR009002
- TIGRFAMs:   TIGR00148

Pfam domain/function: PF01977 UbiD; SSF50475 FMN_binding

EC number: 4.1.1.-

Molecular weight: Translated: 69242; Mature: 69242

Theoretical pI: Translated: 5.10; Mature: 5.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNFKDLRDFLDYLEQRGELKRITHPIDPHYEMTEISDRTLRAKGPALLFENPLGYDFPVL
CCHHHHHHHHHHHHHCCCHHHHCCCCCCCCCHHHCCCCCEECCCCEEEEECCCCCCHHHH
TNLFGTPERVAMGMGRQQVQELRDVGQWLAYLKEPEPPRGLKELIEKLPVFKQVLNMPVK
HHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
RLRRAPCQEIVWQGDAVDLDKIPVMSCWPDDVAPLLTWGLTITRGPHKKRQNLGIYRQQK
HHHHCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCEEEECCCCHHHHCCCHHHHHH
IARNKVIMRWLAHRGGALDLRDWMEKHPGEPFPVSVAFGADPATILGAVTPVPDTLSEYA
HHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCEEEEEECCCHHHHHHCCCCCCHHHHHHH
FAGLLRGSRTEVVKSISNDLEVPASAEIVLEGYIDPNEFADEGPYGDHTGYYNEVERHHV
HHHHHCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHCCCCCCCCCCCCHHHHHHCEE
FTVTHVTMRNKPIYHSTYTGRPPDEPAVLGVALNEVFVPILQKQFPEIADFYLPPEGCSY
EEEEEEEECCCCCEECCCCCCCCCCCCEEHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCE
RMAIVTLKKQYPGHAKRVMLGVWSFLRQFMYTKFVIVCDEQVNARDWPQVIAAMVNHMSP
EEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCHHHHHHHHHHHHCCH
LRDTLFIEHTPIDSLDFASPVVGLGSKIGLDATAKWPAELAVSNSDQSDKTTELSLEALK
HHHHEEEEECCCCCCHHCCHHHHCCCCCCCCCCCCCCHHEEECCCCCCCCHHHHHHHHHH
ACLSDEADVLDVALPEAANDKLVLLLINKQEAGQAQQLLQRVVDKLNGDSPLKFVILCDD
HHHCCCCCEEEEECCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECC
DVNIHDWNDVIWAMTTRMDPARDSLRIVGQDLICFDATNKLPDEVEREWGTPIRKDPKLV
CCCCCCCCCEEEHHCCCCCCCHHHHHHHCCCEEEEECCCCCHHHHHHHHCCCCCCCCHHH
AKIDSLWDELGIV
HHHHHHHHHHCCC
>Mature Secondary Structure
MNFKDLRDFLDYLEQRGELKRITHPIDPHYEMTEISDRTLRAKGPALLFENPLGYDFPVL
CCHHHHHHHHHHHHHCCCHHHHCCCCCCCCCHHHCCCCCEECCCCEEEEECCCCCCHHHH
TNLFGTPERVAMGMGRQQVQELRDVGQWLAYLKEPEPPRGLKELIEKLPVFKQVLNMPVK
HHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
RLRRAPCQEIVWQGDAVDLDKIPVMSCWPDDVAPLLTWGLTITRGPHKKRQNLGIYRQQK
HHHHCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCEEEECCCCHHHHCCCHHHHHH
IARNKVIMRWLAHRGGALDLRDWMEKHPGEPFPVSVAFGADPATILGAVTPVPDTLSEYA
HHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCEEEEEECCCHHHHHHCCCCCCHHHHHHH
FAGLLRGSRTEVVKSISNDLEVPASAEIVLEGYIDPNEFADEGPYGDHTGYYNEVERHHV
HHHHHCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHCCCCCCCCCCCCHHHHHHCEE
FTVTHVTMRNKPIYHSTYTGRPPDEPAVLGVALNEVFVPILQKQFPEIADFYLPPEGCSY
EEEEEEEECCCCCEECCCCCCCCCCCCEEHHHHHHHHHHHHHHHCHHHHHHCCCCCCCCE
RMAIVTLKKQYPGHAKRVMLGVWSFLRQFMYTKFVIVCDEQVNARDWPQVIAAMVNHMSP
EEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCHHHHHHHHHHHHCCH
LRDTLFIEHTPIDSLDFASPVVGLGSKIGLDATAKWPAELAVSNSDQSDKTTELSLEALK
HHHHEEEEECCCCCCHHCCHHHHCCCCCCCCCCCCCCHHEEECCCCCCCCHHHHHHHHHH
ACLSDEADVLDVALPEAANDKLVLLLINKQEAGQAQQLLQRVVDKLNGDSPLKFVILCDD
HHHCCCCCEEEEECCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECC
DVNIHDWNDVIWAMTTRMDPARDSLRIVGQDLICFDATNKLPDEVEREWGTPIRKDPKLV
CCCCCCCCCEEEHHCCCCCCCHHHHHHHCCCEEEEECCCCCHHHHHHHHCCCCCCCCHHH
AKIDSLWDELGIV
HHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10952301