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The map label for this gene is rarD [C]

Identifier: 227080416

GI number: 227080416

Start: 186753

End: 187661

Strand: Reverse

Name: rarD [C]

Synonym: VCM66_0183

Alternate gene names: 227080416

Gene position: 187661-186753 (Counterclockwise)

Preceding gene: 227080420

Following gene: 227080415

Centisome position: 6.49

GC content: 52.59

Gene sequence:

>909_bases
TTGTTCATGACACCCGACCAACAAGATGCCAAAAAAGGAATTTTGCTCGCGATCAGCGCATACACCATGTGGGGCATTGC
GCCGATTTATTTCAAAGCACTTGGCGCCGTATCGGCGCTGGAAATCCTTAGCCACCGAGTGGTGTGGTCATTTGTGTTAC
TCGCGGTGCTGATTCACCTCGGTCGGCGCTGGCGCAGCGTCGTTGGCGTAGTACACACTCCGCGCAAATTTTGGCTGCTG
TTAGTGACCGCTTTGCTCGTGGGGGGTAACTGGCTGATTTTTATCTGGTCAATCAACGCTAATCATATGCTGGATGCCAG
TTTAGGCTACTACATTAATCCGCTACTCAACGTGCTGCTCGGCATGCTGTTTCTCGGCGAGCGCCTGCGTAAATTGCAGT
GGTTTGCGGTCGCGCTTGCCGCGATTGGCGTGGGCATTCAGTTAGTGGTGTTTGGCTCAGTGCCGATTGTGGCGATTGCC
CTTGCCACCAGCTTTGGCTTTTATGGTCTGCTGCGTAAAAAGATCCAAGTCGATGCGCAAACAGGCTTGTTCCTTGAAAC
CCTGTTTATGCTGCCCGCCGCCGCCATCTACCTAATCTGGCTCGCCGATACACCAACCAGTGATATGGCACTCAACACTT
GGCAGCTCAATCTGCTCTTGGTTTGCGCTGGCGTCGTGACTACCTTGCCACTGCTCTGTTTTACCGGAGCCGCAGCGCGT
CTCAAACTCTCAACGCTTGGTTTTTTCCAATATATCGGCCCGAGTTTGATGTTTTTGCTCGCAGTTCTGGTCTACGGTGA
AGCCTTTACCAGCGATAAAGCGATCACCTTTGCTTTCATTTGGAGTGCGTTGGTCATCTTCAGTGTTGATGGGTTAAAAG
CAGGACACGCCGCACGGCGTGCACGTTAG

Upstream 100 bases:

>100_bases
TACTCGGTGAATAAAACCGCAAAATACGTACAGTGTACGATTCTCAGGTTATACTTCGCTGCTACCGCCGCCAAAGCGGT
CATCACCATAACCAGAGAAG

Downstream 100 bases:

>100_bases
AGCTCGCTACCGAGGTAAGCTATCCCGGCTTACCTCCCTATTCCACCTCGTCTAACTCGTTCAATCCTGAGACATTGCTG
CATAAATCATCGATTTAGCC

Product: rarD protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MFMTPDQQDAKKGILLAISAYTMWGIAPIYFKALGAVSALEILSHRVVWSFVLLAVLIHLGRRWRSVVGVVHTPRKFWLL
LVTALLVGGNWLIFIWSINANHMLDASLGYYINPLLNVLLGMLFLGERLRKLQWFAVALAAIGVGIQLVVFGSVPIVAIA
LATSFGFYGLLRKKIQVDAQTGLFLETLFMLPAAAIYLIWLADTPTSDMALNTWQLNLLLVCAGVVTTLPLLCFTGAAAR
LKLSTLGFFQYIGPSLMFLLAVLVYGEAFTSDKAITFAFIWSALVIFSVDGLKAGHAARRAR

Sequences:

>Translated_302_residues
MFMTPDQQDAKKGILLAISAYTMWGIAPIYFKALGAVSALEILSHRVVWSFVLLAVLIHLGRRWRSVVGVVHTPRKFWLL
LVTALLVGGNWLIFIWSINANHMLDASLGYYINPLLNVLLGMLFLGERLRKLQWFAVALAAIGVGIQLVVFGSVPIVAIA
LATSFGFYGLLRKKIQVDAQTGLFLETLFMLPAAAIYLIWLADTPTSDMALNTWQLNLLLVCAGVVTTLPLLCFTGAAAR
LKLSTLGFFQYIGPSLMFLLAVLVYGEAFTSDKAITFAFIWSALVIFSVDGLKAGHAARRAR
>Mature_302_residues
MFMTPDQQDAKKGILLAISAYTMWGIAPIYFKALGAVSALEILSHRVVWSFVLLAVLIHLGRRWRSVVGVVHTPRKFWLL
LVTALLVGGNWLIFIWSINANHMLDASLGYYINPLLNVLLGMLFLGERLRKLQWFAVALAAIGVGIQLVVFGSVPIVAIA
LATSFGFYGLLRKKIQVDAQTGLFLETLFMLPAAAIYLIWLADTPTSDMALNTWQLNLLLVCAGVVTTLPLLCFTGAAAR
LKLSTLGFFQYIGPSLMFLLAVLVYGEAFTSDKAITFAFIWSALVIFSVDGLKAGHAARRAR

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 DUF6 domain

Homologues:

Organism=Escherichia coli, GI48994976, Length=295, Percent_Identity=58.6440677966102, Blast_Score=360, Evalue=1e-101,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y195_VIBCH (Q9KVF1)

Other databases:

- EMBL:   AE003852
- PIR:   D82351
- RefSeq:   NP_229852.1
- GeneID:   2614559
- GenomeReviews:   AE003852_GR
- KEGG:   vch:VC0195
- TIGR:   VC_0195
- HOGENOM:   HBG649355
- OMA:   ITFGFIW
- ProtClustDB:   CLSK2392347
- GO:   GO:0006810
- InterPro:   IPR000620
- InterPro:   IPR004626
- TIGRFAMs:   TIGR00688

Pfam domain/function: PF00892 DUF6

EC number: NA

Molecular weight: Translated: 33179; Mature: 33179

Theoretical pI: Translated: 10.26; Mature: 10.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x24461f20)-; HASH(0x23a316fc)-; HASH(0x23e0e54c)-; HASH(0x24d5d7b4)-; HASH(0x2461ec4c)-; HASH(0x247e9580)-; HASH(0x241d3b10)-; HASH(0x23ddd8e0)-; HASH(0x24d95370)-; HASH(0x240b4a28)-;

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFMTPDQQDAKKGILLAISAYTMWGIAPIYFKALGAVSALEILSHRVVWSFVLLAVLIHL
CCCCCCHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GRRWRSVVGVVHTPRKFWLLLVTALLVGGNWLIFIWSINANHMLDASLGYYINPLLNVLL
HHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCEECCHHHHHHHHHHHHHH
GMLFLGERLRKLQWFAVALAAIGVGIQLVVFGSVPIVAIALATSFGFYGLLRKKIQVDAQ
HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCC
TGLFLETLFMLPAAAIYLIWLADTPTSDMALNTWQLNLLLVCAGVVTTLPLLCFTGAAAR
CCHHHHHHHHHHHHHHHEEEECCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
LKLSTLGFFQYIGPSLMFLLAVLVYGEAFTSDKAITFAFIWSALVIFSVDGLKAGHAARR
EEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHC
AR
CH
>Mature Secondary Structure
MFMTPDQQDAKKGILLAISAYTMWGIAPIYFKALGAVSALEILSHRVVWSFVLLAVLIHL
CCCCCCHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GRRWRSVVGVVHTPRKFWLLLVTALLVGGNWLIFIWSINANHMLDASLGYYINPLLNVLL
HHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCEECCHHHHHHHHHHHHHH
GMLFLGERLRKLQWFAVALAAIGVGIQLVVFGSVPIVAIALATSFGFYGLLRKKIQVDAQ
HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCC
TGLFLETLFMLPAAAIYLIWLADTPTSDMALNTWQLNLLLVCAGVVTTLPLLCFTGAAAR
CCHHHHHHHHHHHHHHHEEEECCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
LKLSTLGFFQYIGPSLMFLLAVLVYGEAFTSDKAITFAFIWSALVIFSVDGLKAGHAARR
EEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHC
AR
CH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10952301