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The map label for this gene is yidZ [H]

Identifier: 227080304

GI number: 227080304

Start: 68215

End: 69198

Strand: Reverse

Name: yidZ [H]

Synonym: VCM66_0068

Alternate gene names: 227080304

Gene position: 69198-68215 (Counterclockwise)

Preceding gene: 227080307

Following gene: 227080303

Centisome position: 2.39

GC content: 47.46

Gene sequence:

>984_bases
GTGGTATATCGTCATTGCTGTTATTCTATTTTGGAAAAACTCATGCAAATTGAAAAATTGGCCCGTATCGATCTCAATCT
ACTGGTCTGTTTAAAAGTATTGATTGAAGAGTTAAGCGTCACGCGCGCGGCTGCACGTTTATGTCTGAGCCAATCGGCCG
TGAGTAAATCCTTAGCCAAGCTACGCGAGCAGTTTGACGACCCGTTGTTTGTTCGCACGTCTTATGGACTGAATGCGACC
CCGAAGGCGCTCTTCTTAAAACCCAAACTGGATGTGTTGGTGAATCAGCTTGAGCTACTAACTCAGCCCGCACATTTCTC
CCCCCAATCCAGCGAATATCGCTTTCAGATCGCGGCGGTCGAAAGTGTTTATCCATTGATCATGCCCTACTTTTTACCGA
CGATTTTTCGCCACGGTCCTCATCTGAGCATCAGCACCCATGCATGGACTGAACAAACCTTCCGTAAATTACAAGTTGGC
GAACTGGATTTCGGTCTGACTGGTAAAGACATTGATATCAATGATGCGAAGTTGACCTTATTGCCTCCTGCTGACATTTG
TGAACAAGAGATCTACCGCGATAATCAGCGCTGTGTGGTGCGCCGCGGCCACCCGGTACTTCAGTATGATTGGAATTTAT
CCAGCTATCTCAACCTCCGTCATGTACAAGTGCGCTGTGATGGAAATGATCGCTGGCTGCTGGATTATCGATTAGCCGAT
CTCGGCTATGAGCGCGACATTGCGATTACCGTACCAGACTTCAATAGTGCAGCCAGTTTGTGCACCTATACGGACTTTAT
TTTTACCGCACCGAGCCACTTTACTCACTGGGTCGCCAAGCAGATGGATCTGGTTGAATTACCATTACCGATGGAGTTTC
CACCTATGGCATACACACTATTTTGGCATCGTGAACGAGAGAATGACCCTGCGCTGCGCTGGTTACGAGAACTGATACAA
ACCAATACGCTTCATTTACGCTGA

Upstream 100 bases:

>100_bases
TGCTGCTTACTGACCTGAGATGGCATTGCTTGTTTCACTTCACACTCCGACTGAATTTTAAAGATCGGTGCATGATACGT
GGCTCAAGATATGCTAAACA

Downstream 100 bases:

>100_bases
GTTGATAGTCGGATATTTGCGCAGCGTACACAAAAAGAGTAGCTTATTCGCTCTCGTCCACTTGCTGTATGTGGTTCGTA
TAATCCATACACAAGAGATA

Product: transcriptional regulator, LysR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 327; Mature: 327

Protein sequence:

>327_residues
MVYRHCCYSILEKLMQIEKLARIDLNLLVCLKVLIEELSVTRAAARLCLSQSAVSKSLAKLREQFDDPLFVRTSYGLNAT
PKALFLKPKLDVLVNQLELLTQPAHFSPQSSEYRFQIAAVESVYPLIMPYFLPTIFRHGPHLSISTHAWTEQTFRKLQVG
ELDFGLTGKDIDINDAKLTLLPPADICEQEIYRDNQRCVVRRGHPVLQYDWNLSSYLNLRHVQVRCDGNDRWLLDYRLAD
LGYERDIAITVPDFNSAASLCTYTDFIFTAPSHFTHWVAKQMDLVELPLPMEFPPMAYTLFWHRERENDPALRWLRELIQ
TNTLHLR

Sequences:

>Translated_327_residues
MVYRHCCYSILEKLMQIEKLARIDLNLLVCLKVLIEELSVTRAAARLCLSQSAVSKSLAKLREQFDDPLFVRTSYGLNAT
PKALFLKPKLDVLVNQLELLTQPAHFSPQSSEYRFQIAAVESVYPLIMPYFLPTIFRHGPHLSISTHAWTEQTFRKLQVG
ELDFGLTGKDIDINDAKLTLLPPADICEQEIYRDNQRCVVRRGHPVLQYDWNLSSYLNLRHVQVRCDGNDRWLLDYRLAD
LGYERDIAITVPDFNSAASLCTYTDFIFTAPSHFTHWVAKQMDLVELPLPMEFPPMAYTLFWHRERENDPALRWLRELIQ
TNTLHLR
>Mature_327_residues
MVYRHCCYSILEKLMQIEKLARIDLNLLVCLKVLIEELSVTRAAARLCLSQSAVSKSLAKLREQFDDPLFVRTSYGLNAT
PKALFLKPKLDVLVNQLELLTQPAHFSPQSSEYRFQIAAVESVYPLIMPYFLPTIFRHGPHLSISTHAWTEQTFRKLQVG
ELDFGLTGKDIDINDAKLTLLPPADICEQEIYRDNQRCVVRRGHPVLQYDWNLSSYLNLRHVQVRCDGNDRWLLDYRLAD
LGYERDIAITVPDFNSAASLCTYTDFIFTAPSHFTHWVAKQMDLVELPLPMEFPPMAYTLFWHRERENDPALRWLRELIQ
TNTLHLR

Specific function: Involved in anaerobic NO protection [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790147, Length=299, Percent_Identity=32.1070234113712, Blast_Score=153, Evalue=2e-38,
Organism=Escherichia coli, GI87081684, Length=308, Percent_Identity=25, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI87081766, Length=307, Percent_Identity=23.4527687296417, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1786820, Length=100, Percent_Identity=38, Blast_Score=65, Evalue=8e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 38010; Mature: 38010

Theoretical pI: Translated: 6.89; Mature: 6.89

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVYRHCCYSILEKLMQIEKLARIDLNLLVCLKVLIEELSVTRAAARLCLSQSAVSKSLAK
CCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LREQFDDPLFVRTSYGLNATPKALFLKPKLDVLVNQLELLTQPAHFSPQSSEYRFQIAAV
HHHHCCCCEEEEEECCCCCCCCEEEECCHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEH
ESVYPLIMPYFLPTIFRHGPHLSISTHAWTEQTFRKLQVGELDFGLTGKDIDINDAKLTL
HHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEE
LPPADICEQEIYRDNQRCVVRRGHPVLQYDWNLSSYLNLRHVQVRCDGNDRWLLDYRLAD
ECCHHHHHHHHHCCCCEEEEECCCEEEEECCCHHHHEEEEEEEEEECCCCEEEEEEEEHH
LGYERDIAITVPDFNSAASLCTYTDFIFTAPSHFTHWVAKQMDLVELPLPMEFPPMAYTL
CCCCCEEEEECCCCCCHHHHHHHHHHEEECCHHHHHHHHHCCCCEECCCCCCCCCCEEEE
FWHRERENDPALRWLRELIQTNTLHLR
EEEECCCCCHHHHHHHHHHHCCCEECC
>Mature Secondary Structure
MVYRHCCYSILEKLMQIEKLARIDLNLLVCLKVLIEELSVTRAAARLCLSQSAVSKSLAK
CCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LREQFDDPLFVRTSYGLNATPKALFLKPKLDVLVNQLELLTQPAHFSPQSSEYRFQIAAV
HHHHCCCCEEEEEECCCCCCCCEEEECCHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEH
ESVYPLIMPYFLPTIFRHGPHLSISTHAWTEQTFRKLQVGELDFGLTGKDIDINDAKLTL
HHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEE
LPPADICEQEIYRDNQRCVVRRGHPVLQYDWNLSSYLNLRHVQVRCDGNDRWLLDYRLAD
ECCHHHHHHHHHCCCCEEEEECCCEEEEECCCHHHHEEEEEEEEEECCCCEEEEEEEEHH
LGYERDIAITVPDFNSAASLCTYTDFIFTAPSHFTHWVAKQMDLVELPLPMEFPPMAYTL
CCCCCEEEEECCCCCCHHHHHHHHHHEEECCHHHHHHHHHCCCCEECCCCCCCCCCEEEE
FWHRERENDPALRWLRELIQTNTLHLR
EEEECCCCCHHHHHHHHHHHCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA