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The map label for this gene is patM [H]

Identifier: 227080246

GI number: 227080246

Start: 5605

End: 6276

Strand: Reverse

Name: patM [H]

Synonym: VCM66_0009

Alternate gene names: 227080246

Gene position: 6276-5605 (Counterclockwise)

Preceding gene: 227080247

Following gene: 227080245

Centisome position: 0.22

GC content: 50.3

Gene sequence:

>672_bases
ATGGGTTTTGACTTTCACTACATGCTTGAGCTGCTGCCAATCTTGCTCAAATATCTGGGTACGACTCTGGAAATGGCCAG
CTGGGGGCTAGTTTTCGCGCTGATTTTGGCGCTGTTTCTAGCCAATATTCGGGTATTCAAAGTGCCAGTGTTGGATCCCC
TTAGCCAGCTCTACATCAGTTTTTTCCGCGGAACGCCGCTGCTTGTACAGTTATTTTTGCTCTACTACGGTTTACCGCAA
GTCTTCCCCCTGTTGGTTGGGCTTGATGCATTCAGCGCTGCGGTGATCGGTTTAACGCTACATTTTGCCGCTTACATGGC
GGAAAGCATTCGCGCCGCGATCATCGGTATTGATCGCAGCCAAATGGAAGCCAGCTTATCCGTCGGAATGACCACTTCTC
AGGCGATGCGCCGGATCATTTTGCCACAAGCCACACGCGTTGCTCTGCCTTCATTGATGAACTATTTCATTGATATGATC
AAATCAACCTCCCTCGCCTTTACCCTTGGCGTGGCTGAGATCATGGCTAAAGCGCAGATGGAAGCTTCATCCAGTTTCCG
TTTTTTCGAAGCCTTCTTGGCGGTAGCCCTCATCTATTGGGTGGTGGTTTTGGTGCTCACTCGCCTGCAATCTTGGGCAG
AGCAGAAACTCAATAAGGCGTACGCACGATGA

Upstream 100 bases:

>100_bases
TCGGTACCGATATCTCGCAATAATTCTGCTTCACCAAGCTAGACTCTATTCTATAAAGGTGGGACTTTCCCACCTTTGAT
TATTTTAGGAAGGAAAGCAG

Downstream 100 bases:

>100_bases
TTAAATTGCAGAATATCCACAAAAGGTTTGGTACCAGTGAAGTACTAAAAGGCATTGATCTTGAAATCCAACGCGGAGAG
ATCGTGGTCATCATCGGCTC

Product: amino acid ABC transproter, permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 223; Mature: 222

Protein sequence:

>223_residues
MGFDFHYMLELLPILLKYLGTTLEMASWGLVFALILALFLANIRVFKVPVLDPLSQLYISFFRGTPLLVQLFLLYYGLPQ
VFPLLVGLDAFSAAVIGLTLHFAAYMAESIRAAIIGIDRSQMEASLSVGMTTSQAMRRIILPQATRVALPSLMNYFIDMI
KSTSLAFTLGVAEIMAKAQMEASSSFRFFEAFLAVALIYWVVVLVLTRLQSWAEQKLNKAYAR

Sequences:

>Translated_223_residues
MGFDFHYMLELLPILLKYLGTTLEMASWGLVFALILALFLANIRVFKVPVLDPLSQLYISFFRGTPLLVQLFLLYYGLPQ
VFPLLVGLDAFSAAVIGLTLHFAAYMAESIRAAIIGIDRSQMEASLSVGMTTSQAMRRIILPQATRVALPSLMNYFIDMI
KSTSLAFTLGVAEIMAKAQMEASSSFRFFEAFLAVALIYWVVVLVLTRLQSWAEQKLNKAYAR
>Mature_222_residues
GFDFHYMLELLPILLKYLGTTLEMASWGLVFALILALFLANIRVFKVPVLDPLSQLYISFFRGTPLLVQLFLLYYGLPQV
FPLLVGLDAFSAAVIGLTLHFAAYMAESIRAAIIGIDRSQMEASLSVGMTTSQAMRRIILPQATRVALPSLMNYFIDMIK
STSLAFTLGVAEIMAKAQMEASSSFRFFEAFLAVALIYWVVVLVLTRLQSWAEQKLNKAYAR

Specific function: Probably part of a binding-protein-dependent transport system for an amino acid. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=219, Percent_Identity=47.0319634703196, Blast_Score=188, Evalue=3e-49,
Organism=Escherichia coli, GI1787030, Length=218, Percent_Identity=33.4862385321101, Blast_Score=121, Evalue=3e-29,
Organism=Escherichia coli, GI1787086, Length=217, Percent_Identity=37.7880184331797, Blast_Score=107, Evalue=8e-25,
Organism=Escherichia coli, GI1786874, Length=187, Percent_Identity=31.5508021390374, Blast_Score=97, Evalue=7e-22,
Organism=Escherichia coli, GI87082239, Length=205, Percent_Identity=31.219512195122, Blast_Score=94, Evalue=6e-21,
Organism=Escherichia coli, GI1788645, Length=195, Percent_Identity=35.3846153846154, Blast_Score=93, Evalue=1e-20,
Organism=Escherichia coli, GI1786873, Length=219, Percent_Identity=29.6803652968037, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1788646, Length=210, Percent_Identity=27.1428571428571, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1787087, Length=219, Percent_Identity=25.5707762557078, Blast_Score=70, Evalue=8e-14,
Organism=Escherichia coli, GI48994930, Length=122, Percent_Identity=31.1475409836066, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 24954; Mature: 24823

Theoretical pI: Translated: 9.50; Mature: 9.50

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGFDFHYMLELLPILLKYLGTTLEMASWGLVFALILALFLANIRVFKVPVLDPLSQLYIS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEECCHHHHHHHHHHH
FFRGTPLLVQLFLLYYGLPQVFPLLVGLDAFSAAVIGLTLHFAAYMAESIRAAIIGIDRS
HHCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
QMEASLSVGMTTSQAMRRIILPQATRVALPSLMNYFIDMIKSTSLAFTLGVAEIMAKAQM
HHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EASSSFRFFEAFLAVALIYWVVVLVLTRLQSWAEQKLNKAYAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
GFDFHYMLELLPILLKYLGTTLEMASWGLVFALILALFLANIRVFKVPVLDPLSQLYIS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEECCHHHHHHHHHHH
FFRGTPLLVQLFLLYYGLPQVFPLLVGLDAFSAAVIGLTLHFAAYMAESIRAAIIGIDRS
HHCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
QMEASLSVGMTTSQAMRRIILPQATRVALPSLMNYFIDMIKSTSLAFTLGVAEIMAKAQM
HHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EASSSFRFFEAFLAVALIYWVVVLVLTRLQSWAEQKLNKAYAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA